Epigenome-wide Association Studies and the Interpretation of Disease -Omics von Birney, Ewan, Smith, George Davey, Greally, John M

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Chromatin organization in the female mouse brain fluctuates across the oestrous cycle von Jaric, Ivana, Rocks, Devin, Greally, John M., Suzuki, Masako, Kundakovic, Marija

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Pediatric Obesity-Related Asthma: The Role of Metabolic Dysregulation von Vijayakanthi, Nandini, Greally, John M, Rastogi, Deepa

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Genetic-epigenetic interactions in cis: a major focus in the post-GWAS era von Do, Catherine, Shearer, Alyssa, Suzuki, Masako, Terry, Mary Beth, Gelernter, Joel, Greally, John M, Tycko, Benjamin

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Using epigenomics to understand cellular responses to environmental influences in diseases von Wattacheril, Julia J, Raj, Srilakshmi, Knowles, David A, Greally, John M

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Genetic recombination is targeted towards gene promoter regions in dogs von Auton, Adam, Rui Li, Ying, Kidd, Jeffrey, Oliveira, Kyle, Nadel, Julie, Holloway, J Kim, Hayward, Jessica J, Cohen, Paula E, Greally, John M, Wang, Jun, Bustamante, Carlos D, Boyko, Adam R

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The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data von de Torrente, Laurence, Zimmerman, Samuel, Suzuki, Masako, Christopeit, Maximilian, Greally, John M., Mar, Jessica C.

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A user's guide to the ambiguous word 'epigenetics' von Greally, John M.

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Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data von Kong, Yu, Rastogi, Deepa, Seoighe, Cathal, Greally, John M, Suzuki, Masako

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Recommendations for clinical interpretation of variants found in non-coding regions of the genome von Ellingford, Jamie M, Ahn, Joo Wook, Bagnall, Richard D, Baralle, Diana, Barton, Stephanie, Campbell, Chris, Downes, Kate, Ellard, Sian, Duff-Farrier, Celia, FitzPatrick, David R, Greally, John M, Ingles, Jodie, Krishnan, Neesha, Lord, Jenny, Martin, Hilary C, Newman, William G, O'Donnell-Luria, Anne, Ramsden, Simon C, Rehm, Heidi L, Richardson, Ebony, Singer-Berk, Moriel, Taylor, Jenny C, Williams, Maggie, Wood, Jordan C, Wright, Caroline F, Harrison, Steven M, Whiffin, Nicola

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Associating cellular epigenetic models with human phenotypes von Lappalainen, Tuuli, Greally, John M.

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Engineering a haematopoietic stem cell niche by revitalizing mesenchymal stromal cells von Nakahara, Fumio, Borger, Daniel K., Wei, Qiaozhi, Pinho, Sandra, Maryanovich, Maria, Zahalka, Ali H., Suzuki, Masako, Cruz, Cristian D., Wang, Zichen, Xu, Chunliang, Boulais, Philip E., Ma’ayan, Avi, Greally, John M., Frenette, Paul S.

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LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation von Chow, Jennifer C., Ciaudo, Constance, Fazzari, Melissa J., Mise, Nathan, Servant, Nicolas, Glass, Jacob L., Attreed, Matthew, Avner, Philip, Wutz, Anton, Barillot, Emmanuel, Greally, John M., Voinnet, Olivier, Heard, Edith

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Vitamin D Deficiency During Development Permanently Alters Liver Cell Composition and Function von Lundy, Kassidy, Greally, John F, Essilfie-Bondzie, Grace, Olivier, Josephine B, Doña-Termine, Reanna, Greally, John M, Suzuki, Masako

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Distinct Factors Control Histone Variant H3.3 Localization at Specific Genomic Regions von Goldberg, Aaron D., Banaszynski, Laura A., Noh, Kyung-Min, Lewis, Peter W., Elsaesser, Simon J., Stadler, Sonja, Dewell, Scott, Law, Martin, Guo, Xingyi, Li, Xuan, Wen, Duancheng, Chapgier, Ariane, DeKelver, Russell C., Miller, Jeffrey C., Lee, Ya-Li, Boydston, Elizabeth A., Holmes, Michael C., Gregory, Philip D., Greally, John M., Rafii, Shahin, Yang, Chingwen, Scambler, Peter J., Garrick, David, Gibbons, Richard J., Higgs, Douglas R., Cristea, Ileana M., Urnov, Fyodor D., Zheng, Deyou, Allis, C. David

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Mosaic epigenetic dysregulation of ectodermal cells in autism spectrum disorder von Berko, Esther R, Suzuki, Masako, Beren, Faygel, Lemetre, Christophe, Alaimo, Christine M, Calder, R Brent, Ballaban-Gil, Karen, Gounder, Batya, Kampf, Kaylee, Kirschen, Jill, Maqbool, Shahina B, Momin, Zeineen, Reynolds, David M, Russo, Natalie, Shulman, Lisa, Stasiek, Edyta, Tozour, Jessica, Valicenti-McDermott, Maria, Wang, Shenglong, Abrahams, Brett S, Hargitai, Joseph, Inbar, Dov, Zhang, Zhengdong, Buxbaum, Joseph D, Molholm, Sophie, Foxe, John J, Marion, Robert W, Auton, Adam, Greally, John M

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Epigenetics, cellular memory and gene regulation von Henikoff, Steven, Greally, John M.

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Ascorbic acid-induced TET activation mitigates adverse hydroxymethylcytosine loss in renal cell carcinoma von Shenoy, Niraj, Bhagat, Tushar D, Cheville, John, Lohse, Christine, Bhattacharyya, Sanchari, Tischer, Alexander, Machha, Venkata, Gordon-Mitchell, Shanisha, Choudhary, Gaurav, Wong, Li-Fan, Gross, LouAnn, Ressigue, Emily, Leibovich, Bradley, Boorjian, Stephen A, Steidl, Ulrich, Wu, Xiaosheng, Pradhan, Kith, Gartrell, Benjamin, Agarwal, Beamon, Pagliaro, Lance, Suzuki, Masako, Greally, John M, Rakheja, Dinesh, Thompson, R Houston, Susztak, Katalin, Witzig, Thomas, Zou, Yiyu, Verma, Amit

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Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes von Reddington, James P, Perricone, Sara M, Nestor, Colm E, Reichmann, Judith, Youngson, Neil A, Suzuki, Masako, Reinhardt, Diana, Dunican, Donncha S, Prendergast, James G, Mjoseng, Heidi, Ramsahoye, Bernard H, Whitelaw, Emma, Greally, John M, Adams, Ian R, Bickmore, Wendy A, Meehan, Richard R

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Regulatory landscape enrichment analysis (RLEA): a computational toolkit for non-coding variant enrichment and cell type prioritization von Rosean, Samuel, Sosa, Eric A, O'Shea, Dónal, Raj, Srilakshmi M, Seoighe, Cathal, Greally, John M

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