Purification of cross-linked RNA-protein complexes by phenol-toluol extraction von Urdaneta, Erika C., Vieira-Vieira, Carlos H., Hick, Timon, Wessels, Hans-Herrmann, Figini, Davide, Moschall, Rebecca, Medenbach, Jan, Ohler, Uwe, Granneman, Sander, Selbach, Matthias, Beckmann, Benedikt M.

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A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease von Granneman, Sander, Petfalski, Elisabeth, Tollervey, David

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The nuclear RNA polymerase II surveillance system targets polymerase III transcripts von Wlotzka, Wiebke, Kudla, Grzegorz, Granneman, Sander, Tollervey, David

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Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs von Granneman, Sander, Kudla, Grzegorz, Petfalski, Elisabeth, Tollervey, David

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Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli von Tree, Jai J., Granneman, Sander, McAteer, Sean P., Tollervey, David, Gally, David L.

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diffBUM-HMM: a robust statistical modeling approach for detecting RNA flexibility changes in high-throughput structure probing data von Marangio, Paolo, Law, Ka Ying Toby, Sanguinetti, Guido, Granneman, Sander

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The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins von Chu, Liang-Cui, Arede, Pedro, Li, Wei, Urdaneta, Erika C., Ivanova, Ivayla, McKellar, Stuart W., Wills, Jimi C., Fröhlich, Theresa, von Kriegsheim, Alexander, Beckmann, Benedikt M., Granneman, Sander

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RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination von Choudhury, Nila Roy, Heikel, Gregory, Trubitsyna, Maryia, Kubik, Peter, Nowak, Jakub Stanislaw, Webb, Shaun, Granneman, Sander, Spanos, Christos, Rappsilber, Juri, Castello, Alfredo, Michlewski, Gracjan

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Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation von Sharma, Sunny, Yang, Jun, van Nues, Rob, Watzinger, Peter, Kötter, Peter, Lafontaine, Denis L J, Granneman, Sander, Entian, Karl-Dieter

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Puf6 primes 60S pre-ribosome nuclear export at low temperature von Gerhardy, Stefan, Oborská-Oplová, Michaela, Gillet, Ludovic, Börner, Richard, van Nues, Rob, Leitner, Alexander, Michel, Erich, Petkowski, Janusz J., Granneman, Sander, Sigel, Roland K. O., Aebersold, Ruedi, Panse, Vikram Govind

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The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay von Kelbert, Moran, Jordán-Pla, Antonio, de Miguel-Jiménez, Lola, García-Martínez, José, Selitrennik, Michael, Guterman, Adi, Henig, Noa, Granneman, Sander, Pérez-Ortín, José E, Chávez, Sebastián, Choder, Mordechai

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RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3′UTR required for intermediate vancomycin resistance von Mediati, Daniel G., Wong, Julia L., Gao, Wei, McKellar, Stuart, Pang, Chi Nam Ignatius, Wu, Sylvania, Wu, Winton, Sy, Brandon, Monk, Ian R., Biazik, Joanna M., Wilkins, Marc R., Howden, Benjamin P., Stinear, Timothy P., Granneman, Sander, Tree, Jai J.

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Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1 von Kilchert, Cornelia, Wittmann, Sina, Passoni, Monica, Shah, Sneha, Granneman, Sander, Vasiljeva, Lidia

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Vanillin inhibits translation and induces messenger ribonucleoprotein (mRNP) granule formation in saccharomyces cerevisiae: application and validation of high-content, image-based... von Iwaki, Aya, Ohnuki, Shinsuke, Suga, Yohei, Izawa, Shingo, Ohya, Yoshikazu

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Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis von Bohnsack, Markus T., Martin, Roman, Granneman, Sander, Ruprecht, Maike, Schleiff, Enrico, Tollervey, David

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The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot von Sardana, Richa, Liu, Xin, Granneman, Sander, Zhu, Jieyi, Gill, Michael, Papoulas, Ophelia, Marcotte, Edward M, Tollervey, David, Correll, Carl C, Johnson, Arlen W

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The mitochondrial RNA landscape of Saccharomyces cerevisiae von Turk, Edward M, Das, Vaijayanti, Seibert, Ryan D, Andrulis, Erik D

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Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling von Barrass, J David, Reid, Jane E A, Huang, Yuanhua, Hector, Ralph D, Sanguinetti, Guido, Beggs, Jean D, Granneman, Sander

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The Nrd1-like protein Seb1 coordinates cotranscriptional 3' end processing and polyadenylation site selection von Lemay, Jean-François, Marguerat, Samuel, Larochelle, Marc, Liu, Xiaochuan, van Nues, Rob, Hunyadkürti, Judit, Hoque, Mainul, Tian, Bin, Granneman, Sander, Bähler, Jürg, Bachand, François

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The role of RNA‐binding proteins in mediating adaptive responses in Gram‐positive bacteria von Christopoulou, Niki, Granneman, Sander

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