Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package von Tuncbag, Nurcan, Gosline, Sara J C, Kedaigle, Amanda, Soltis, Anthony R, Gitter, Anthony, Fraenkel, Ernest

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A field guide to cultivating computational biology von Way, Gregory P., Greene, Casey S., Carninci, Piero, Carvalho, Benilton S., de Hoon, Michiel, Finley, Stacey, Gosline, Sara J. C., Le Cao, Kim-Anh, Lee, Jerry S. H., Marchionni, Luigi, Robine, Nicolas, Sindi, Suzanne S., Theis, Fabian J., Yang, Jean Y. H., Carpenter, Anne E., Fertig, Elana J.

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The evolution and multi-molecular properties of NF1 cutaneous neurofibromas originating from C-fiber sensory endings and terminal Schwann cells at normal sites of sensory terminati... von Rice, Frank L, Houk, George, Wymer, James P, Gosline, Sara J C, Guinney, Justin, Wu, Jianqiang, Ratner, Nancy, Jankowski, Michael P, La Rosa, Salvo, Dockum, Marilyn, Storey, James R, Carroll, Steven L, Albrecht, Phillip J, Riccardi, Vincent M

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Posttranscriptional Regulation of PER1 Underlies the Oncogenic Function of IREα von PLUQUET, Olivier, DEJEANS, Nicolas, DUGOT-SENANT, Nathalie, VITAL, Anne, LOISEAU, Hugues, GOSLINE, Sara J. C, TAOUJI, Said, HALLETT, Michael, SARKARIA, Jann N, ANDERSON, Keith, WENTING WU, RODRIGUEZ, Fausto J, BOUCHECAREILH, Marion, ROSENBAUM, Jean, SALTEL, Frédéric, FERNANDEZ-ZAPICO, Martin E, CHEVET, Eric, LHOMOND, Stephanie, PINEAU, Raphael, HIGA, Arisa, DELUGIN, Maylis, COMBE, Chantal, LORIOT, Sandrine, CUBEL, Gaelle

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leapR: An R Package for Multiomic Pathway Analysis von Danna, Vincent, Mitchell, Hugh, Anderson, Lindsey, Godinez, Iobani, Gosline, Sara J. C, Teeguarden, Justin, McDermott, Jason E

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Linking proteomic and transcriptional data through the interactome and epigenome reveals a map of oncogene-induced signaling von Huang, Shao-shan Carol, Clarke, David C, Gosline, Sara J C, Labadorf, Adam, Chouinard, Candace R, Gordon, William, Lauffenburger, Douglas A, Fraenkel, Ernest

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Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens von Ursu, Oana, Gosline, Sara J C, Beeharry, Neil, Fink, Lauren, Bhattacharjee, Vikram, Huang, Shao-Shan Carol, Zhou, Yan, Yen, Tim, Fraenkel, Ernest

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Intracellular eukaryotic parasites have a distinct unfolded protein response von Gosline, Sara J C, Nascimento, Mirna, McCall, Laura-Isobel, Zilberstein, Dan, Thomas, David Y, Matlashewski, Greg, Hallett, Michael

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Probing the chemical–biological relationship space with the Drug Target Explorer von Allaway, Robert J., La Rosa, Salvatore, Guinney, Justin, Gosline, Sara J. C.

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The Superfund Research Program Analytics Portal: linking environmental chemical exposure to biological phenotypes von Gosline, Sara J. C., Kim, Doo Nam, Pande, Paritosh, Thomas, Dennis G., Truong, Lisa, Hoffman, Peter, Barton, Michael, Loftus, Joseph, Moran, Addy, Hampton, Shawn, Dowson, Scott, Franklin, Lyndsey, Degnan, David, Anderson, Lindsey, Thessen, Anne, Tanguay, Robyn L., Anderson, Kim A., Waters, Katrina M.

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Quantitative Proteomics Analysis of the Secretory Pathway von Gilchrist, Annalyn, Au, Catherine E., Hiding, Johan, Bell, Alexander W., Fernandez-Rodriguez, Julia, Lesimple, Souad, Nagaya, Hisao, Roy, Line, Gosline, Sara J.C., Hallett, Michael, Paiement, Jacques, Kearney, Robert E., Nilsson, Tommy, Bergeron, John J.M.

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SAMNetWeb: identifying condition-specific networks linking signaling and transcription von Gosline, Sara J C, Oh, Coyin, Fraenkel, Ernest

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Proteomic and phosphoproteomic measurements enhance ability to predict ex vivo drug response in AML von Gosline, Sara J C, Tognon, Cristina, Nestor, Michael, Joshi, Sunil, Modak, Rucha, Damnernsawad, Alisa, Posso, Camilo, Moon, Jamie, Hansen, Joshua R, Hutchinson-Bunch, Chelsea, Pino, James C, Gritsenko, Marina A, Weitz, Karl K, Traer, Elie, Tyner, Jeffrey, Druker, Brian, Agarwal, Anupriya, Piehowski, Paul, McDermott, Jason E, Rodland, Karin

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The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance von Joshi, Sunil K., Nechiporuk, Tamilla, Bottomly, Daniel, Piehowski, Paul D., Reisz, Julie A., Pittsenbarger, Janét, Kaempf, Andy, Gosline, Sara J.C., Wang, Yi-Ting, Hansen, Joshua R., Gritsenko, Marina A., Hutchinson, Chelsea, Weitz, Karl K., Moon, Jamie, Cendali, Francesca, Fillmore, Thomas L., Tsai, Chia-Feng, Schepmoes, Athena A., Shi, Tujin, Arshad, Osama A., McDermott, Jason E., Babur, Ozgun, Watanabe-Smith, Kevin, Demir, Emek, D'Alessandro, Angelo, Liu, Tao, Tognon, Cristina E., Tyner, Jeffrey W., McWeeney, Shannon K., Rodland, Karin D., Druker, Brian J., Traer, Elie

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Mass Spectrometry-Based Proteogenomics: New Therapeutic Opportunities for Precision Medicine von Joshi, Sunil K, Piehowski, Paul, Liu, Tao, Gosline, Sara J.C, McDermott, Jason E, Druker, Brian J, Traer, Elie, Tyner, Jeffrey W, Agarwal, Anupriya, Tognon, Cristina E, Rodland, Karin D

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Spatiotemporal Loss of NF1 in Schwann Cell Lineage Leads to Different Types of Cutaneous Neurofibroma Susceptible to Modification by the Hippo Pathway von Chen, Zhiguo, Mo, Juan, Brosseau, Jean-Philippe, Shipman, Tracey, Wang, Yong, Liao, Chung-Ping, Cooper, Jonathan M, Allaway, Robert J, Gosline, Sara J C, Guinney, Justin, Carroll, Thomas J, Le, Lu Q

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Cutaneous neurofibromas in the genomics era: current understanding and open questions von Allaway, Robert J., Gosline, Sara J. C., La Rosa, Salvatore, Knight, Pamela, Bakker, Annette, Guinney, Justin, Le, Lu Q.

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SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets von Gosline, Sara J C, Spencer, Sarah J, Ursu, Oana, Fraenkel, Ernest

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Elucidating MicroRNA Regulatory Networks Using Transcriptional, Post-transcriptional, and Histone Modification Measurements von Gosline, Sara J.C., Gurtan, Allan M., JnBaptiste, Courtney K., Bosson, Andrew, Milani, Pamela, Dalin, Simona, Matthews, Bryan J., Yap, Yoon S., Sharp, Phillip A., Fraenkel, Ernest

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Proteome Mapping of the Human Pancreatic Islet Microenvironment Reveals Endocrine–Exocrine Signaling Sphere of Influence von Gosline, Sara J.C., Velickovic, Marija, Pino, James, Day, Le Z., Attah, Isaac K., Swensen, Adam C., Danna, Vincent, Posso, Camilo, Rodland, Karin D., Chen, Jing, Matthews, Clayton E., Campbell-Thompson, Martha, Laskin, Julia, Burnum-Johnson, Kristin, Zhu, Ying, Piehowski, Paul D.

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