GENESPACE tracks regions of interest and gene copy number variation across multiple genomes von Lovell, John T, Sreedasyam, Avinash, Schranz, M Eric, Wilson, Melissa, Carlson, Joseph W, Harkess, Alex, Emms, David, Goodstein, David M, Schmutz, Jeremy

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Phytozome: a comparative platform for green plant genomics von Goodstein, David M., Shu, Shengqiang, Howson, Russell, Neupane, Rochak, Hayes, Richard D., Fazo, Joni, Mitros, Therese, Dirks, William, Hellsten, Uffe, Putnam, Nicholas , Rokhsar, Daniel S.

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JBrowse: a dynamic web platform for genome visualization and analysis von Buels, Robert, Yao, Eric, Diesh, Colin M, Hayes, Richard D, Munoz-Torres, Monica, Helt, Gregg, Goodstein, David M, Elsik, Christine G, Lewis, Suzanna E, Stein, Lincoln, Holmes, Ian H

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The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory von Craig, Rory J, Gallaher, Sean D, Shu, Shengqiang, Salomé, Patrice A, Jenkins, Jerry W, Blaby-Haas, Crysten E, Purvine, Samuel O, O'Donnell, Samuel, Barry, Kerrie, Grimwood, Jane, Strenkert, Daniela, Kropat, Janette, Daum, Chris, Yoshinaga, Yuko, Goodstein, David M, Vallon, Olivier, Schmutz, Jeremy, Merchant, Sabeeha S

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The Amphimedon queenslandica genome and the evolution of animal complexity von Srivastava, Mansi, Simakov, Oleg, Chapman, Jarrod, Fahey, Bryony, Gauthier, Marie E. A., Mitros, Therese, Richards, Gemma S., Conaco, Cecilia, Dacre, Michael, Hellsten, Uffe, Larroux, Claire, Putnam, Nicholas H., Stanke, Mario, Adamska, Maja, Darling, Aaron, Degnan, Sandie M., Oakley, Todd H., Plachetzki, David C., Zhai, Yufeng, Adamski, Marcin, Calcino, Andrew, Cummins, Scott F., Goodstein, David M., Harris, Christina, Jackson, Daniel J., Leys, Sally P., Shu, Shengqiang, Woodcroft, Ben J., Vervoort, Michel, Kosik, Kenneth S., Manning, Gerard, Degnan, Bernard M., Rokhsar, Daniel S.

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The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism von Yang, Xiaohan, Hu, Rongbin, Yin, Hengfu, Jenkins, Jerry, Shu, Shengqiang, Tang, Haibao, Liu, Degao, Weighill, Deborah A., Cheol Yim, Won, Ha, Jungmin, Heyduk, Karolina, Goodstein, David M., Guo, Hao-Bo, Moseley, Robert C., Fitzek, Elisabeth, Jawdy, Sara, Zhang, Zhihao, Xie, Meng, Hartwell, James, Grimwood, Jane, Abraham, Paul E., Mewalal, Ritesh, Beltrán, Juan D., Boxall, Susanna F., Dever, Louisa V., Palla, Kaitlin J., Albion, Rebecca, Garcia, Travis, Mayer, Jesse A., Don Lim, Sung, Man Wai, Ching, Peluso, Paul, Van Buren, Robert, De Paoli, Henrique Cestari, Borland, Anne M., Guo, Hong, Chen, Jin-Gui, Muchero, Wellington, Yin, Yanbin, Jacobson, Daniel A., Tschaplinski, Timothy J., Hettich, Robert L., Ming, Ray, Winter, Klaus, Leebens-Mack, James H., Smith, J. Andrew C., Cushman, John C., Schmutz, Jeremy, Tuskan, Gerald A.

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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure von Gordon, Sean P., Contreras-Moreira, Bruno, Woods, Daniel P., Des Marais, David L., Burgess, Diane, Shu, Shengqiang, Stritt, Christoph, Roulin, Anne C., Schackwitz, Wendy, Tyler, Ludmila, Martin, Joel, Lipzen, Anna, Dochy, Niklas, Phillips, Jeremy, Barry, Kerrie, Geuten, Koen, Budak, Hikmet, Juenger, Thomas E., Amasino, Richard, Caicedo, Ana L., Goodstein, David, Davidson, Patrick, Mur, Luis A. J., Figueroa, Melania, Freeling, Michael, Catalan, Pilar, Vogel, John P.

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The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution von Verde, Ignazio, Abbott, Albert G, Scalabrin, Simone, Jung, Sook, Shu, Shengqiang, Marroni, Fabio, Zhebentyayeva, Tatyana, Dettori, Maria Teresa, Grimwood, Jane, Cattonaro, Federica, Zuccolo, Andrea, Rossini, Laura, Jenkins, Jerry, Vendramin, Elisa, Meisel, Lee A, Decroocq, Veronique, Sosinski, Bryon, Prochnik, Simon, Mitros, Therese, Policriti, Alberto, Cipriani, Guido, Dondini, Luca, Ficklin, Stephen, Goodstein, David M, Xuan, Pengfei, Fabbro, Cristian Del, Aramini, Valeria, Copetti, Dario, Gonzalez, Susana, Horner, David S, Falchi, Rachele, Lucas, Susan, Mica, Erica, Maldonado, Jonathan, Lazzari, Barbara, Bielenberg, Douglas, Pirona, Raul, Miculan, Mara, Barakat, Abdelali, Testolin, Raffaele, Stella, Alessandra, Tartarini, Stefano, Tonutti, Pietro, Arús, Pere, Orellana, Ariel, Wells, Christina, Main, Dorrie, Vizzotto, Giannina, Silva, Herman, Salamini, Francesco, Schmutz, Jeremy, Morgante, Michele, Rokhsar, Daniel S

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A reference genome for common bean and genome-wide analysis of dual domestications von Schmutz, Jeremy, McClean, Phillip E, Mamidi, Sujan, Wu, G Albert, Cannon, Steven B, Grimwood, Jane, Jenkins, Jerry, Shu, Shengqiang, Song, Qijian, Chavarro, Carolina, Torres-Torres, Mirayda, Geffroy, Valerie, Moghaddam, Samira Mafi, Gao, Dongying, Abernathy, Brian, Barry, Kerrie, Blair, Matthew, Brick, Mark A, Chovatia, Mansi, Gepts, Paul, Goodstein, David M, Gonzales, Michael, Hellsten, Uffe, Hyten, David L, Jia, Gaofeng, Kelly, James D, Kudrna, Dave, Lee, Rian, Richard, Manon M S, Miklas, Phillip N, Osorno, Juan M, Rodrigues, Josiane, Thareau, Vincent, Urrea, Carlos A, Wang, Mei, Yu, Yeisoo, Zhang, Ming, Wing, Rod A, Cregan, Perry B, Rokhsar, Daniel S, Jackson, Scott A

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The genome of Eucalyptus grandis von Myburg, Alexander A., Grattapaglia, Dario, Tuskan, Gerald A., Hellsten, Uffe, Hayes, Richard D., Grimwood, Jane, Jenkins, Jerry, Lindquist, Erika, Tice, Hope, Bauer, Diane, Goodstein, David M., Dubchak, Inna, Poliakov, Alexandre, Mizrachi, Eshchar, Kullan, Anand R. K., Hussey, Steven G., Pinard, Desre, van der Merwe, Karen, Singh, Pooja, van Jaarsveld, Ida, Silva-Junior, Orzenil B., Togawa, Roberto C., Pappas, Marilia R., Faria, Danielle A., Sansaloni, Carolina P., Petroli, Cesar D., Yang, Xiaohan, Ranjan, Priya, Tschaplinski, Timothy J., Ye, Chu-Yu, Li, Ting, Sterck, Lieven, Vanneste, Kevin, Murat, Florent, Soler, Marçal, Clemente, Hélène San, Saidi, Naijib, Cassan-Wang, Hua, Dunand, Christophe, Hefer, Charles A., Bornberg-Bauer, Erich, Kersting, Anna R., Vining, Kelly, Amarasinghe, Vindhya, Ranik, Martin, Naithani, Sushma, Elser, Justin, Boyd, Alexander E., Liston, Aaron, Spatafora, Joseph W., Dharmwardhana, Palitha, Raja, Rajani, Sullivan, Christopher, Romanel, Elisson, Alves-Ferreira, Marcio, Külheim, Carsten, Foley, William, Carocha, Victor, Paiva, Jorge, Kudrna, David, Brommonschenkel, Sergio H., Pasquali, Giancarlo, Byrne, Margaret, Rigault, Philippe, Tibbits, Josquin, Spokevicius, Antanas, Jones, Rebecca C., Steane, Dorothy A., Vaillancourt, René E., Potts, Brad M., Joubert, Fourie, Barry, Kerrie, Pappas, Georgios J., Strauss, Steven H., Jaiswal, Pankaj, Grima-Pettenati, Jacqueline, Salse, Jérôme, Van de Peer, Yves, Rokhsar, Daniel S., Schmutz, Jeremy

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Construction and comparison of three reference‐quality genome assemblies for soybean von Valliyodan, Babu, Cannon, Steven B., Bayer, Philipp E., Shu, Shengqiang, Brown, Anne V., Ren, Longhui, Jenkins, Jerry, Chung, Claire Y.‐L., Chan, Ting‐Fung, Daum, Christopher G., Plott, Christopher, Hastie, Alex, Baruch, Kobi, Barry, Kerrie W., Huang, Wei, Patil, Gunvant, Varshney, Rajeev K., Hu, Haifei, Batley, Jacqueline, Yuan, Yuxuan, Song, Qijian, Stupar, Robert M., Goodstein, David M., Stacey, Gary, Lam, Hon‐Ming, Jackson, Scott A., Schmutz, Jeremy, Grimwood, Jane, Edwards, David, Nguyen, Henry T.

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The BioMart community portal: an innovative alternative to large, centralized data repositories von Smedley, Damian, Haider, Syed, Durinck, Steffen, Pandini, Luca, Provero, Paolo, Allen, James, Arnaiz, Olivier, Awedh, Mohammad Hamza, Baldock, Richard, Barbiera, Giulia, Bardou, Philippe, Beck, Tim, Blake, Andrew, Bonierbale, Merideth, Brookes, Anthony J, Bucci, Gabriele, Buetti, Iwan, Burge, Sarah, Cabau, Cédric, Carlson, Joseph W, Chelala, Claude, Chrysostomou, Charalambos, Cittaro, Davide, Collin, Olivier, Cordova, Raul, Cutts, Rosalind J, Dassi, Erik, Di Genova, Alex, Djari, Anis, Esposito, Anthony, Estrella, Heather, Eyras, Eduardo, Fernandez-Banet, Julio, Forbes, Simon, Free, Robert C, Fujisawa, Takatomo, Gadaleta, Emanuela, Garcia-Manteiga, Jose M, Goodstein, David, Gray, Kristian, Guerra-Assunção, José Afonso, Haggarty, Bernard, Han, Dong-Jin, Han, Byung Woo, Harris, Todd, Harshbarger, Jayson, Hastings, Robert K, Hayes, Richard D, Hoede, Claire, Hu, Shen, Hu, Zhi-Liang, Hutchins, Lucie, Kan, Zhengyan, Kawaji, Hideya, Keliet, Aminah, Kerhornou, Arnaud, Kim, Sunghoon, Kinsella, Rhoda, Klopp, Christophe, Kong, Lei, Lawson, Daniel, Lazarevic, Dejan, Lee, Ji-Hyun, Letellier, Thomas, Li, Chuan-Yun, Lio, Pietro, Liu, Chu-Jun, Luo, Jie, Maass, Alejandro, Mariette, Jerome, Maurel, Thomas, Merella, Stefania, Mohamed, Azza Mostafa, Moreews, Francois, Nabihoudine, Ibounyamine, Ndegwa, Nelson, Noirot, Céline, Perez-Llamas, Cristian, Primig, Michael, Quattrone, Alessandro, Quesneville, Hadi, Rambaldi, Davide, Reecy, James, Riba, Michela, Rosanoff, Steven, Saddiq, Amna Ali, Salas, Elisa, Sallou, Olivier, Shepherd, Rebecca, Simon, Reinhard, Sperling, Linda, Spooner, William, Staines, Daniel M, Steinbach, Delphine, Stone, Kevin, Stupka, Elia, Teague, Jon W, Dayem Ullah, Abu Z, Wang, Jun, Ware, Doreen

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Genome sequence of the palaeopolyploid soybean von Schmutz, Jeremy, Cannon, Steven B, Schlueter, Jessica, Ma, Jianxin, Mitros, Therese, Nelson, William, Hyten, David L, Song, Qijian, Thelen, Jay J, Cheng, Jianlin, Xu, Dong, Hellsten, Uffe, Peto, Myron, Grant, David, Cregan, Perry, Shoemaker, Randy C

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Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium von Scarlett, Virginia T, Lovell, John T, Shao, Mingqin, Phillips, Jeremy, Shu, Shengqiang, Lusinska, Joanna, Goodstein, David M, Jenkins, Jerry, Grimwood, Jane, Barry, Kerrie, Chalhoub, Boulos, Schmutz, Jeremy, Hasterok, Robert, Catalán, Pilar, Vogel, John P

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A view of the pan‐genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.) von Liang, Qihua, Muñoz‐Amatriaín, María, Shu, Shengqiang, Lo, Sassoum, Wu, Xinyi, Carlson, Joseph W., Davidson, Patrick, Goodstein, David M., Phillips, Jeremy, Janis, Nadia M., Lee, Elaine J., Liang, Chenxi, Morrell, Peter L., Farmer, Andrew D., Xu, Pei, Close, Timothy J., Lonardi, Stefano

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The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins von Dehal, Paramvir, Satou, Yutaka, Campbell, Robert K., Chapman, Jarrod, Degnan, Bernard, de Tomaso, Anthony, Davidson, Brad, Di Gregorio, Anna, Gelpke, Maarten, Goodstein, David M., Harafuji, Naoe, Kenneth E. M. Hastings, Ho, Isaac, Hotta, Kohji, Huang, Wayne, Kawashima, Takeshi, Lemaire, Patrick, Martinez, Diego, Meinertzhagen, Ian A., Necula, Simona, Nonaka, Masaru, Putnam, Nik, Rash, Sam, Saiga, Hidetoshi, Satake, Masanobu, Terry, Astrid, Yamada, Lixy, Wang, Hong-Gang, Awazu, Satoko, Azumi, Kaoru, Boore, Jeffrey, Branno, Margherita, Chin-bow, Stephen, DeSantis, Rosaria, Doyle, Sharon, Francino, Pilar, Keys, David N., Haga, Shinobu, Hayashi, Hiroko, Hino, Kyosuke, Imai, Kaoru S., Inaba, Kazuo, Kano, Shungo, Kobayashi, Kenji, Kobayashi, Mari, Lee, Byung-In, Makabe, Kazuhiro W., Manohar, Chitra, Matassi, Giorgio, Medina, Monica, Mochizuki, Yasuaki, Mount, Steve, Morishita, Tomomi, Miura, Sachiko, Nakayama, Akie, Nishizaka, Satoko, Nomoto, Hisayo, Ohta, Fumiko, Oishi, Kazuko, Rigoutsos, Isidore, Sano, Masako, Sasaki, Akane, Sasakura, Yasunori, Shoguchi, Eiichi, Tadasu Shin-i, Spagnuolo, Antoinetta, Stainier, Didier, Suzuki, Miho M., Tassy, Olivier, Takatori, Naohito, Tokuoka, Miki, Yagi, Kasumi, Yoshizaki, Fumiko, Wada, Shuichi, Zhang, Cindy, Hyatt, P. Douglas, Larimer, Frank, Detter, Chris, Doggett, Norman, Glavina, Tijana, Hawkins, Trevor, Richardson, Paul, Lucas, Susan, Kohara, Yuji, Levine, Michael, Satoh, Nori, Rokhsar, Daniel S.

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Genome sequence and evolution of Betula platyphylla von Chen, Su, Wang, Yucheng, Yu, Lili, Zheng, Tao, Wang, Sui, Yue, Zhen, Jiang, Jing, Kumari, Sapna, Zheng, Chunfang, Tang, Haibao, Li, Jun, Li, Yuqi, Chen, Jiongjiong, Zhang, Wenbo, Kuang, Hanhui, Robertson, Jon S., Zhao, Patrick X., Li, Huiyu, Shu, Shengqiang, Yordanov, Yordan S., Huang, Haijiao, Goodstein, David M., Gai, Ying, Qi, Qi, Min, JiuMeng, Xu, ChunYan, Wang, SongBo, Qu, Guan-Zheng, Paterson, Andrew H., Sankoff, David, Wei, Hairong, Liu, Guifeng, Yang, Chuanping

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The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum von Lei, Li, Gordon, Sean P, Liu, Lifeng, Sade, Nir, Lovell, John T, Rubio Wilhelmi, Maria Del Mar, Singan, Vasanth, Sreedasyam, Avinash, Hestrin, Rachel, Phillips, Jeremy, Hernandez, Bryan T, Barry, Kerrie, Shu, Shengqiang, Jenkins, Jerry, Schmutz, Jeremy, Goodstein, David M, Thilmony, Roger, Blumwald, Eduardo, Vogel, John P

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The DNA sequence and biology of human chromosome 19 von Grimwood, Jane, Gordon, Laurie A., Olsen, Anne, Terry, Astrid, Schmutz, Jeremy, Lamerdin, Jane, Hellsten, Uffe, Goodstein, David, Couronne, Olivier, Tran-Gyamfi, Mary, Aerts, Andrea, Altherr, Michael, Ashworth, Linda, Bajorek, Eva, Black, Stacey, Branscomb, Elbert, Caenepeel, Sean, Carrano, Anthony, Caoile, Chenier, Man Chan, Yee, Christensen, Mari, Cleland, Catherine A., Copeland, Alex, Dalin, Eileen, Dehal, Paramvir, Denys, Mirian, Detter, John C., Escobar, Julio, Flowers, Dave, Fotopulos, Dea, Garcia, Carmen, Georgescu, Anca M., Glavina, Tijana, Gomez, Maria, Gonzales, Eidelyn, Groza, Matthew, Hammon, Nancy, Hawkins, Trevor, Haydu, Lauren, Ho, Isaac, Huang, Wayne, Israni, Sanjay, Jett, Jamie, Kadner, Kristen, Kimball, Heather, Kobayashi, Arthur, Larionov, Vladimer, Leem, Sun-Hee, Lopez, Frederick, Lou, Yunian, Lowry, Steve, Malfatti, Stephanie, Martinez, Diego, McCready, Paula, Medina, Catherine, Morgan, Jenna, Nelson, Kathryn, Nolan, Matt, Ovcharenko, Ivan, Pitluck, Sam, Pollard, Martin, Popkie, Anthony P., Predki, Paul, Quan, Glenda, Ramirez, Lucia, Rash, Sam, Retterer, James, Rodriguez, Alex, Rogers, Stephanine, Salamov, Asaf, Salazar, Angelica, She, Xinwei, Smith, Doug, Slezak, Tom, Solovyev, Victor, Thayer, Nina, Tice, Hope, Tsai, Ming, Ustaszewska, Anna, Vo, Nu, Wagner, Mark, Wheeler, Jeremy, Wu, Kevin, Xie, Gary, Yang, Joan, Dubchak, Inna, Furey, Terrence S., DeJong, Pieter, Dickson, Mark, Gordon, David, Eichler, Evan E., Pennacchio, Len A., Richardson, Paul, Stubbs, Lisa, Rokhsar, Daniel S., Myers, Richard M., Rubin, Edward M., Lucas, Susan M.

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The Genome Portal of the Department of Energy Joint Genome Institute von Grigoriev, Igor V., Nordberg, Henrik, Shabalov, Igor, Aerts, Andrea, Cantor, Mike, Goodstein, David, Kuo, Alan, Minovitsky, Simon, Nikitin, Roman, Ohm, Robin A., Otillar, Robert, Poliakov, Alex, Ratnere, Igor, Riley, Robert, Smirnova, Tatyana, Rokhsar, Daniel, Dubchak, Inna

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