Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors von Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.

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The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode von Foster, Jeremy, Ganatra, Mehul, Kamal, Ibrahim, Ware, Jennifer, Makarova, Kira, Ivanova, Natalia, Bhattacharyya, Anamitra, Kapatral, Vinayak, Kumar, Sanjay, Posfai, Janos, Vincze, Tamas, Ingram, Jessica, Moran, Laurie, Lapidus, Alla, Omelchenko, Marina, Kyrpides, Nikos, Ghedin, Elodie, Wang, Shiliang, Goltsman, Eugene, Joukov, Victor, Ostrovskaya, Olga, Tsukerman, Kiryl, Mazur, Mikhail, Comb, Donald, Koonin, Eugene, Slatko, Barton

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Terabase-scale metagenome coassembly with MetaHipMer von Hofmeyr, Steven, Egan, Rob, Georganas, Evangelos, Copeland, Alex C., Riley, Robert, Clum, Alicia, Eloe-Fadrosh, Emiley, Roux, Simon, Goltsman, Eugene, Buluç, Aydın, Rokhsar, Daniel, Oliker, Leonid, Yelick, Katherine

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korarchaeal genome reveals insights into the evolution of the Archaea von Elkins, James G, Podar, Mircea, Graham, David E, Makarova, Kira S, Wolf, Yuri, Randau, Lennart, Hedlund, Brian P, Brochier-Armanet, Céline, Kunin, Victor, Anderson, Iain, Lapidus, Alla, Goltsman, Eugene, Barry, Kerrie, Koonin, Eugene V, Hugenholtz, Phil, Kyrpides, Nikos, Wanner, Gerhard, Richardson, Paul, Keller, Martin, Stetter, Karl O

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Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis von McBride, Mark J, Xie, Gary, Martens, Eric C, Lapidus, Alla, Henrissat, Bernard, Rhodes, Ryan G, Goltsman, Eugene, Wang, Wei, Xu, Jian, Hunnicutt, David W, Staroscik, Andrew M, Hoover, Timothy R, Cheng, Yi-Qiang, Stein, Jennifer L

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The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri von Frese, Steven A, Benson, Andrew K, Tannock, Gerald W, Loach, Diane M, Kim, Jaehyoung, Zhang, Min, Oh, Phaik Lyn, Heng, Nicholas C K, Patil, Prabhu B, Juge, Nathalie, Mackenzie, Donald A, Pearson, Bruce M, Lapidus, Alla, Dalin, Eileen, Tice, Hope, Goltsman, Eugene, Land, Miriam, Hauser, Loren, Ivanova, Natalia, Kyrpides, Nikos C, Walter, Jens

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Use of simulated data sets to evaluate the fidelity of metagenomic processing methods von Mavromatis, Konstantinos, Ivanova, Natalia, Barry, Kerrie, Shapiro, Harris, Goltsman, Eugene, McHardy, Alice C, Rigoutsos, Isidore, Salamov, Asaf, Korzeniewski, Frank, Land, Miriam, Lapidus, Alla, Grigoriev, Igor, Richardson, Paul, Hugenholtz, Philip, Kyrpides, Nikos C

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Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus von Bolotin, A, Quinquis, B, Renault, P, Sorokin, A, Ehrlich, S.D, Kulakauskas, S, Lapidus, A, Goltsman, E, Mazur, M, Pusch, G.D

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Genomic characterization of methanomicrobiales reveals three classes of methanogens von Anderson, Iain, Ulrich, Luke E, Lupa, Boguslaw, Susanti, Dwi, Porat, Iris, Hooper, Sean D, Lykidis, Athanasios, Sieprawska-Lupa, Magdalena, Dharmarajan, Lakshmi, Goltsman, Eugene, Lapidus, Alla, Saunders, Elizabeth, Han, Cliff, Land, Miriam, Lucas, Susan, Mukhopadhyay, Biswarup, Whitman, William B, Woese, Carl, Bristow, James, Kyrpides, Nikos

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Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography von Normand, Philippe, Lapierre, Pascal, Tisa, Louis S, Gogarten, Johann Peter, Alloisio, Nicole, Bagnarol, Emilie, Bassi, Carla A, Berry, Alison M, Bickhart, Derek M, Choisne, Nathalie, Couloux, Arnaud, Cournoyer, Benoit, Cruveiller, Stephane, Daubin, Vincent, Demange, Nadia, Francino, Maria Pilar, Goltsman, Eugene, Huang, Ying, Kopp, Olga R, Labarre, Laurent, Lapidus, Alla, Lavire, Celine, Marechal, Joelle, Martinez, Michele, Mastronunzio, Juliana E, Mullin, Beth C, Niemann, James, Pujic, Pierre, Rawnsley, Tania, Rouy, Zoe, Schenowitz, Chantal, Sellstedt, Anita, Tavares, Fernando, Tomkins, Jeffrey P, Vallenet, David, Valverde, Claudio, Wall, Luis G, Wang, Ying, Medigue, Claudine, Benson, David R

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Comparison of the Complete Genome Sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000 von Feil, Helene, Feil, William S., Chain, Patrick, Larimer, Frank, DiBartolo, Genevieve, Copeland, Alex, Lykidis, Athanasios, Trong, Stephen, Nolan, Matt, Goltsman, Eugene, Thiel, James, Malfatti, Stephanie, Loper, Joyce E., Lapidus, Alla, Detter, John C., Land, Miriam, Richardson, Paul M., Kyrpides, Nikos C., Ivanova, Natalia, Lindow, Steven E.

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Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei von Morales, Jorge, Kokkori, Sofia, Weidauer, Diana, Chapman, Jarrod, Goltsman, Eugene, Rokhsar, Daniel, Grossman, Arthur R, Nowack, Eva C M

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Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides von McMurdie, Paul J, Behrens, Sebastian F, Müller, Jochen A, Göke, Jonathan, Ritalahti, Kirsti M, Wagner, Ryan, Goltsman, Eugene, Lapidus, Alla, Holmes, Susan, Löffler, Frank E, Spormann, Alfred M

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Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity von Lapidus, Alla, Goltsman, Eugene, Auger, Sandrine, Galleron, Nathalie, Ségurens, Béatrice, Dossat, Carole, Land, Miriam L., Broussolle, Veronique, Brillard, Julien, Guinebretiere, Marie-Helene, Sanchis, Vincent, Nguen-the, Christophe, Lereclus, Didier, Richardson, Paul, Wincker, Patrick, Weissenbach, Jean, Ehrlich, S. Dusko, Sorokin, Alexei

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The Genome Sequence of the Facultative Intracellular Pathogen Brucella melitensis von DelVecchio, Vito G., Kapatral, Vinayak, Redkar, Rajendra J., Patra, Guy, Mujer, Cesar, Los, Tamara, Ivanova, Natalia, Anderson, Iain, Bhattacharyya, Anamitra, Lykidis, Athanasios, Reznik, Gary, Jablonski, Lynn, Larsen, Niels, D'Souza, Mark, Bernal, Axel, Mazur, Mikhail, Goltsman, Eugene, Selkov, Eugene, Elzer, Philip H., Hagius, Sue, O'Callaghan, David, Letesson, Jean-Jacques, Haselkorn, Robert, Kyrpides, Nikos, Overbeek, Ross

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Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586 von Kapatral, Vinayak, Anderson, Iain, Ivanova, Natalia, Reznik, Gary, Los, Tamara, Lykidis, Athanasios, Bhattacharyya, Anamitra, Bartman, Allen, Gardner, Warren, Grechkin, Galina, Zhu, Lihua, Vasieva, Olga, Chu, Lien, Kogan, Yakov, Chaga, Oleg, Goltsman, Eugene, Bernal, Axel, Larsen, Niels, D'Souza, Mark, Walunas, Theresa, Pusch, Gordon, Haselkorn, Robert, Fonstein, Michael, Kyrpides, Nikos, Overbeek, Ross

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Genome Sequence of the Verrucomicrobium Opitutus terrae PB90-1, an Abundant Inhabitant of Rice Paddy Soil Ecosystems von VAN PASSEL, Mark W. J, KANT, Ravi, HUI SUN, SCHMUTZ, Jeremy, LARIMER, Frank W, LAND, Miriam L, HAUSER, Loren, KYRPIDES, Nikolaos, MIKHAILOVA, Natalia, RICHARDSON, P. Paul, JANSSEN, Peter H, DE VOS, Willem M, PALVA, Airi, SMIDT, Hauke, COPELAND, Alex, LUCAS, Susan, LAPIDUS, Alia, DEL RIO, Tijana Glavina, PITLUCK, Sam, GOLTSMAN, Eugene, CLUM, Alicia

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Plant Pan-Genomics Comes of Age von Lei, Li, Goltsman, Eugene, Goodstein, David, Wu, Guohong Albert, Rokhsar, Daniel S, Vogel, John P

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Critical Assessment of Metagenome Interpretation: the second round of challenges von Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Kwan, Jason, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn

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Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis von Ivanova, Natalia, Sorokin, Alexei, Anderson, Iain, Galleron, Nathalie, Candelon, Benjamin, Kapatral, Vinayak, Bhattacharyya, Anamitra, Reznik, Gary, Mikhailova, Natalia, Lapidus, Alla, Chu, Lien, Mazur, Michael, Goltsman, Eugene, Larsen, Niels, D'Souza, Mark, Walunas, Theresa, Grechkin, Yuri, Pusch, Gordon, Haselkorn, Robert, Fonstein, Michael, Dusko Ehrlich, S, Overbeek, Ross, Kyrpides, Nikos

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