The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data von Cerami, Ethan, Gao, Jianjiong, Dogrusoz, Ugur, Gross, Benjamin E, Sumer, Selcuk Onur, Aksoy, Bülent Arman, Jacobsen, Anders, Byrne, Caitlin J, Heuer, Michael L, Larsson, Erik, Antipin, Yevgeniy, Reva, Boris, Goldberg, Arthur P, Sander, Chris, Schultz, Nikolaus

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Identification of Small Exonic CNV from Whole-Exome Sequence Data and Application to Autism Spectrum Disorder von Poultney, Christopher S., Goldberg, Arthur P., Drapeau, Elodie, Kou, Yan, Harony-Nicolas, Hala, Kajiwara, Yuji, De Rubeis, Silvia, Durand, Simon, Stevens, Christine, Rehnström, Karola, Palotie, Aarno, Daly, Mark J., Ma’ayan, Avi, Fromer, Menachem, Buxbaum, Joseph D.

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Most genetic risk for autism resides with common variation von Gaugler, Trent, Klei, Lambertus, Sanders, Stephan J, Bodea, Corneliu A, Goldberg, Arthur P, Lee, Ann B, Mahajan, Milind, Manaa, Dina, Pawitan, Yudi, Reichert, Jennifer, Ripke, Stephan, Sandin, Sven, Sklar, Pamela, Svantesson, Oscar, Reichenberg, Abraham, Hultman, Christina M, Devlin, Bernie, Roeder, Kathryn, Buxbaum, Joseph D

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Simulating single-cell metabolism using a stochastic flux-balance analysis algorithm von Tourigny, David S., Goldberg, Arthur P., Karr, Jonathan R.

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Emerging whole-cell modeling principles and methods von Goldberg, Arthur P, Szigeti, Balázs, Chew, Yin Hoon, Sekar, John AP, Roth, Yosef D, Karr, Jonathan R

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VirtualPlant: A Software Platform to Support Systems Biology Research von Katari, Manpreet S, Nowicki, Steve D, Aceituno, Felipe F, Nero, Damion, Kelfer, Jonathan, Thompson, Lee Parnell, Cabello, Juan M, Davidson, Rebecca S, Goldberg, Arthur P, Shasha, Dennis E, Coruzzi, Gloria M, Gutiérrez, Rodrigo A

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Best Practices for Making Reproducible Biochemical Models von Porubsky, Veronica L., Goldberg, Arthur P., Rampadarath, Anand K., Nickerson, David P., Karr, Jonathan R., Sauro, Herbert M.

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A blueprint for human whole-cell modeling von Szigeti, Balázs, Roth, Yosef D., Sekar, John A.P., Goldberg, Arthur P., Pochiraju, Saahith C., Karr, Jonathan R.

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Publisher Correction: Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder von Lim, Elaine T., Uddin, Mohammed, De Rubeis, Silvia, Chan, Yingleong, Kamumbu, Anne S., Zhang, Xiaochang, D’Gama, Alissa M., Kim, Sonia N., Hill, Robert Sean, Goldberg, Arthur P., Poultney, Christopher, Minshew, Nancy J., Kushima, Itaru, Aleksic, Branko, Ozaki, Norio, Parellada, Mara, Arango, Celso, Penzol, Maria J., Carracedo, Angel, Kolevzon, Alexander, Hultman, Christina M., Weiss, Lauren A., Fromer, Menachem, Chiocchetti, Andreas G., Freitag, Christine M., Church, George M., Scherer, Stephen W., Buxbaum, Joseph D., Walsh, Christopher A.

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Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci von Sanders, Stephan J., He, Xin, Willsey, A. Jeremy, Ercan-Sencicek, A. Gulhan, Samocha, Kaitlin E., Cicek, A. Ercument, Murtha, Michael T., Bal, Vanessa H., Bishop, Somer L., Dong, Shan, Goldberg, Arthur P., Jinlu, Cai, Keaney, John F., Klei, Lambertus, Mandell, Jeffrey D., Moreno-De-Luca, Daniel, Poultney, Christopher S., Robinson, Elise B., Smith, Louw, Solli-Nowlan, Tor, Su, Mack Y., Teran, Nicole A., Walker, Michael F., Werling, Donna M., Beaudet, Arthur L., Cantor, Rita M., Fombonne, Eric, Geschwind, Daniel H., Grice, Dorothy E., Lord, Catherine, Lowe, Jennifer K., Mane, Shrikant M., Martin, Donna M., Morrow, Eric M., Talkowski, Michael E., Sutcliffe, James S., Walsh, Christopher A., Yu, Timothy W., Ledbetter, David H., Martin, Christa Lese, Cook, Edwin H., Buxbaum, Joseph D., Daly, Mark J., Devlin, Bernie, Roeder, Kathryn, State, Matthew W.

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VirtualPlant: A Software Platform to Support Systems Biology Research1[W][OA] von Katari, Manpreet S, Nowicki, Steve D, Aceituno, Felipe F, Nero, Damion, Kelfer, Jonathan, Thompson, Lee Parnell, Cabello, Juan M, Davidson, Rebecca S, Goldberg, Arthur P, Shasha, Dennis E, Coruzzi, Gloria M, Gutiérrez, Rodrigo A

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BioSimulators: a central registry of simulation engines and services for recommending specific tools von Shaikh, Bilal, Smith, Lucian P, Vasilescu, Dan, Marupilla, Gnaneswara, Wilson, Michael, Agmon, Eran, Agnew, Henry, Andrews, Steven S, Anwar, Azraf, Beber, Moritz E, Bergmann, Frank T, Brooks, David, Brusch, Lutz, Calzone, Laurence, Choi, Kiri, Cooper, Joshua, Detloff, John, Drawert, Brian, Dumontier, Michel, Ermentrout, G Bard, Faeder, James R, Freiburger, Andrew P, Fröhlich, Fabian, Funahashi, Akira, Garny, Alan, Gennari, John H, Gleeson, Padraig, Goelzer, Anne, Haiman, Zachary, Hasenauer, Jan, Hellerstein, Joseph L, Hermjakob, Henning, Hoops, Stefan, Ison, Jon C, Jahn, Diego, Jakubowski, Henry V, Jordan, Ryann, Kalaš, Matúš, König, Matthias, Liebermeister, Wolfram, Sheriff, Rahuman S Malik, Mandal, Synchon, McDougal, Robert, Medley, J Kyle, Mendes, Pedro, Müller, Robert, Myers, Chris J, Naldi, Aurelien, Nguyen, Tung V N, Nickerson, David P, Olivier, Brett G, Patoliya, Drashti, Paulevé, Loïc, Petzold, Linda R, Priya, Ankita, Rampadarath, Anand K, Rohwer, Johann M, Saglam, Ali S, Singh, Dilawar, Sinha, Ankur, Snoep, Jacky, Sorby, Hugh, Spangler, Ryan, Starruß, Jörn, Thomas, Payton J, van Niekerk, David, Weindl, Daniel, Zhang, Fengkai, Zhukova, Anna, Goldberg, Arthur P, Schaff, James C, Blinov, Michael L, Sauro, Herbert M, Moraru, Ion I, Karr, Jonathan R

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The Autism Sequencing Consortium: Large-Scale, High-Throughput Sequencing in Autism Spectrum Disorders von Buxbaum, Joseph D., Daly, Mark J., Devlin, Bernie, Lehner, Thomas, Roeder, Kathryn, State, Matthew W.

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Rates, Distribution, and Implications of Post-zygotic Mosaic Mutations in Autism Spectrum Disorder von Lim, Elaine T., Uddin, Mohammed, De Rubeis, Silvia, Chan, Yingleong, Kamumbu, Anne S., Zhang, Xiaochang, D'Gama, Alissa, Kim, Sonia N., Hill, Robert Sean, Goldberg, Arthur P., Poultney, Christopher, Minshew, Nancy J., Kushima, Itaru, Aleksic, Branko, Ozaki, Norio, Parellada, Mara, Arango, Celso, Penzol, Maria J., Carracedo, Angel, Kolevzon, Alexander, Hultman, Christina M., Weiss, Lauren A., Fromer, Menachem, Chiocchetti, Andreas G., Freitag, Christine M., Church, George M., Scherer, Stephen W., Buxbaum, Joseph D., Walsh, Christopher A.

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SYSTEM, METHOD AND COMPUTER-READABLE MEDIUM FOR UTILIZING A SHARED COMPUTER SYSTEM von GOLDBERG, Arthur P, ROSEN, Matthew A

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System, method and computer-readable medium for utilizing a shared computer system von Goldberg, Arthur P, Rosen, Matthew A

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VirtualPlant: A Software Platform to Support Systems Biology Research : Plant Systems Biology von KATARI, Manpreet S, NOWICKI, Steve D, CORUZZI, Gloria M, GUTIERREZ, Rodrigo A, ACEITUNO, Felipe F, NERO, Damion, KELFER, Jonathan, PARNELL THOMPSON, Lee, CABELLO, Juan M, DAVIDSON, Rebecca S, GOLDBERG, Arthur P, SHASHA, Dennis E

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SYSTEM, METHOD AND COMPUTER-READABLE MEDIUM FOR UTILIZING A SHARED COMPUTER SYSTEM von GOLDBERG, Arthur P, ROSEN, Matthew A

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System, method and computer-readable medium for utilizing a shared computer system von Goldberg, Arthur P, Rosen, Matthew A

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ObjTables: structured spreadsheets that promote data quality, reuse, and integration von Karr, Jonathan R, Liebermeister, Wolfram, Goldberg, Arthur P, Sekar, John A. P, Shaikh, Bilal

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