Theoretical Study of the Remarkably Diverse Linkages in Lignin von Parthasarathi, R, Romero, Raymond A, Redondo, Antonio, Gnanakaran, S

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The Stability of Cellulose: A Statistical Perspective from a Coarse-Grained Model of Hydrogen-Bond Networks von Shen, Tongye, Gnanakaran, S.

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Increased enzyme binding to substrate is not necessary for more efficient cellulose hydrolysis von Gao, Dahai, Chundawat, Shishir P. S., Sethi, Anurag, Balan, Venkatesh, Gnanakaran, S., Dale, Bruce E.

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Emergence of SARS-CoV-2 through recombination and strong purifying selection von Li, Xiaojun, Giorgi, Elena E, Marichannegowda, Manukumar Honnayakanahalli, Foley, Brian, Xiao, Chuan, Kong, Xiang-Peng, Chen, Yue, Gnanakaran, S, Korber, Bette, Gao, Feng

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The SARS-CoV-2 Spike variant D614G favors an open conformational state von Mansbach, Rachael A, Chakraborty, Srirupa, Nguyen, Kien, Montefiori, David C, Korber, Bette, Gnanakaran, S

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Restructuring the Crystalline Cellulose Hydrogen Bond Network Enhances Its Depolymerization Rate von Chundawat, Shishir P. S, Bellesia, Giovanni, Uppugundla, Nirmal, da Costa Sousa, Leonardo, Gao, Dahai, Cheh, Albert M, Agarwal, Umesh P, Bianchetti, Christopher M, Phillips, George N, Langan, Paul, Balan, Venkatesh, Gnanakaran, S, Dale, Bruce E

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Microscopic Approach to Intrinsic Antibiotic Resistance von Manrique, Pedro D, Gnanakaran, S

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Molecular characterization of the outer membrane of Pseudomonas aeruginosa von López, Cesar A., Zgurskaya, Helen, Gnanakaran, S.

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Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus von Liao, Hua-Xin, Lynch, Rebecca, Zhou, Tongqing, Gao, Feng, Alam, S. Munir, Boyd, Scott D., Fire, Andrew Z., Roskin, Krishna M., Schramm, Chaim A., Zhang, Zhenhai, Zhu, Jiang, Shapiro, Lawrence, Mullikin, James C., Gnanakaran, S., Hraber, Peter, Wiehe, Kevin, Kelsoe, Garnett, Yang, Guang, Xia, Shi-Mao, Montefiori, David C., Parks, Robert, Lloyd, Krissey E., Scearce, Richard M., Soderberg, Kelly A., Cohen, Myron, Kamanga, Gift, Louder, Mark K., Tran, Lillian M., Chen, Yue, Cai, Fangping, Chen, Sheri, Moquin, Stephanie, Du, Xiulian, Joyce, M. Gordon, Srivatsan, Sanjay, Zhang, Baoshan, Zheng, Anqi, Shaw, George M., Hahn, Beatrice H., Kepler, Thomas B., Korber, Bette T. M., Kwong, Peter D., Mascola, John R., Haynes, Barton F.

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Permeability Barrier of Gram-Negative Cell Envelopes and Approaches To Bypass It von Zgurskaya, Helen I, López, Cesar A, Gnanakaran, S

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Machine learning-driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins von Ingólfsson, Helgi I, Neale, Chris, Carpenter, Timothy S, Shrestha, Rebika, López, Cesar A, Tran, Timothy H, Oppelstrup, Tomas, Bhatia, Harsh, Stanton, Liam G, Zhang, Xiaohua, Sundram, Shiv, Di Natale, Francesco, Agarwal, Animesh, Dharuman, Gautham, Kokkila Schumacher, Sara I L, Turbyville, Thomas, Gulten, Gulcin, Van, Que N, Goswami, Debanjan, Jean-Francois, Frantz, Agamasu, Constance, Chen, De, Hettige, Jeevapani J, Travers, Timothy, Sarkar, Sumantra, Surh, Michael P, Yang, Yue, Moody, Adam, Liu, Shusen, Van Essen, Brian C, Voter, Arthur F, Ramanathan, Arvind, Hengartner, Nicolas W, Simanshu, Dhirendra K, Stephen, Andrew G, Bremer, Peer-Timo, Gnanakaran, S, Glosli, James N, Lightstone, Felice C, McCormick, Frank, Nissley, Dwight V, Streitz, Frederick H

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HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design von Bricault, Christine A., Yusim, Karina, Seaman, Michael S., Yoon, Hyejin, Theiler, James, Giorgi, Elena E., Wagh, Kshitij, Theiler, Maxwell, Hraber, Peter, Macke, Jennifer P., Kreider, Edward F., Learn, Gerald H., Hahn, Beatrice H., Scheid, Johannes F., Kovacs, James M., Shields, Jennifer L., Lavine, Christy L., Ghantous, Fadi, Rist, Michael, Bayne, Madeleine G., Neubauer, George H., McMahan, Katherine, Peng, Hanqin, Chéneau, Coraline, Jones, Jennifer J., Zeng, Jie, Ochsenbauer, Christina, Nkolola, Joseph P., Stephenson, Kathryn E., Chen, Bing, Gnanakaran, S., Bonsignori, Mattia, Williams, LaTonya D., Haynes, Barton F., Doria-Rose, Nicole, Mascola, John R., Montefiori, David C., Barouch, Dan H., Korber, Bette

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Monatomic ions influence substrate permeation across bacterial microcompartment shells von Trettel, Daniel S., Neale, Chris, Zhao, Mingfei, Gnanakaran, S., Gonzalez-Esquer, C. Raul

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Plasma IgG to linear epitopes in the V2 and V3 regions of HIV-1 gp120 correlate with a reduced risk of infection in the RV144 vaccine efficacy trial von Gottardo, Raphael, Bailer, Robert T, Korber, Bette T, Gnanakaran, S, Phillips, Joshua, Shen, Xiaoying, Tomaras, Georgia D, Turk, Ellen, Imholte, Gregory, Eckler, Larry, Wenschuh, Holger, Zerweck, Johannes, Greene, Kelli, Gao, Hongmei, Berman, Phillip W, Francis, Donald, Sinangil, Faruk, Lee, Carter, Nitayaphan, Sorachai, Rerks-Ngarm, Supachai, Kaewkungwal, Jaranit, Pitisuttithum, Punnee, Tartaglia, James, Robb, Merlin L, Michael, Nelson L, Kim, Jerome H, Zolla-Pazner, Susan, Haynes, Barton F, Mascola, John R, Self, Steve, Gilbert, Peter, Montefiori, David C

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Common processes drive the thermochemical pretreatment of lignocellulosic biomass von Langan, Paul, Petridis, Loukas, O'Neill, Hugh M., Pingali, Sai Venkatesh, Foston, Marcus, Nishiyama, Yoshiharu, Schulz, Roland, Lindner, Benjamin, Hanson, B. Leif, Harton, Shane, Heller, William T., Urban, Volker, Evans, Barbara R., Gnanakaran, S., Ragauskas, Arthur J., Smith, Jeremy C., Davison, Brian H.

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Switch Loop Flexibility Affects Substrate Transport of the AcrB Efflux Pump von Müller, Reinke T., Travers, Timothy, Cha, Hi-jea, Phillips, Joshua L., Gnanakaran, S., Pos, Klaas M.

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Unsupervised Machine Learning for Analysis of Phase Separation in Ternary Lipid Mixture von Löpez, Cesar A, Vesselinov, Velimir V, Gnanakaran, S, Alexandrov, Boian S

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Dynamics of Intact MexAB-OprM Efflux Pump: Focusing on the MexA-OprM Interface von López, Cesar A., Travers, Timothy, Pos, Klaas M., Zgurskaya, Helen I., Gnanakaran, S.

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New understanding of multidrug efflux and permeation in antibiotic resistance, persistence, and heteroresistance von Manrique, Pedro D., López, Cesar A., Gnanakaran, S., Rybenkov, Valentin V., Zgurskaya, Helen I.

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Insights into Hydrogen Bonding and Stacking Interactions in Cellulose von Parthasarathi, R, Bellesia, G, Chundawat, S. P. S, Dale, B. E, Langan, P, Gnanakaran, S

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