Comparison of Two Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Methods with Conventional Phenotypic Identification for Routine Identification of Bac... von Cherkaoui, Abdessalam, Hibbs, Jonathan, Emonet, Stéphane, Tangomo, Manuela, Girard, Myriam, Francois, Patrice, Schrenzel, Jacques

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Root Microbiota in Primary and Secondary Apical Periodontitis von Bouillaguet, Serge, Manoil, Daniel, Girard, Myriam, Louis, Justine, Gaïa, Nadia, Leo, Stefano, Schrenzel, Jacques, Lazarevic, Vladimir

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Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice von Everard, Amandine, Lazarevic, Vladimir, Derrien, Muriel, Girard, Myriam, Muccioli, Giulio G, Muccioli, Giulio M, Neyrinck, Audrey M, Possemiers, Sam, Van Holle, Ann, François, Patrice, de Vos, Willem M, Delzenne, Nathalie M, Schrenzel, Jacques, Cani, Patrice D

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Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR von Lazarevic, Vladimir, Gaïa, Nadia, Girard, Myriam, Schrenzel, Jacques

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Clinical metagenomics of bone and joint infections: a proof of concept study von Ruppé, Etienne, Lazarevic, Vladimir, Girard, Myriam, Mouton, William, Ferry, Tristan, Laurent, Frédéric, Schrenzel, Jacques

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Comparison of DNA extraction methods in analysis of salivary bacterial communities von Lazarevic, Vladimir, Gaïa, Nadia, Girard, Myriam, François, Patrice, Schrenzel, Jacques

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Detection of Bacterial Pathogens from Broncho-Alveolar Lavage by Next-Generation Sequencing von Leo, Stefano, Gaïa, Nadia, Ruppé, Etienne, Emonet, Stephane, Girard, Myriam, Lazarevic, Vladimir, Schrenzel, Jacques

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Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions von Dorsaz, Stephane, Charretier, Yannick, Girard, Myriam, Gaia, Nadia, Leo, Stefano, Schrenzel, Jacques, Harbarth, Stephan, Huttner, Benedikt, Lazarevic, Vladimir

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Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue von Geurts, L, Vos, W.M. de

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Mycobacterium chelonae Infection Identified by Metagenomic Next-Generation Sequencing as the Probable Cause of Acute Contained Rupture of a Biological Composite Graft-A Case Report von Büchler, Andrea C, Lazarevic, Vladimir, Gaïa, Nadia, Girard, Myriam, Eckstein, Friedrich, Egli, Adrian, Sutter, Sarah Tschudin, Schrenzel, Jacques

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Strain coverage of Bexsero vaccine assessed by whole-genome sequencing over a cohort of invasive meningococci of serogroups B and W isolated in Switzerland von Leo, Stefano, Lazarevic, Vladimir, Girard, Myriam, Getaz-Jimenez Velasco, Gisela C., Gaïa, Nadia, Renzi, Gesuele, Cherkaoui, Abdessalam, Hong, Eva, Taha, Muhamed-Kheir, Schrenzel, Jacques

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Effect of bacterial DNA enrichment on detection and quantification of bacteria in an infected tissue model by metagenomic next-generation sequencing von Lazarevic, Vladimir, Gaïa, Nadia, Girard, Myriam, Mauffrey, Florian, Ruppé, Etienne, Schrenzel, Jacques

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Septic shock caused by Capnocytophaga canis after a cat scratch von Donner, Viviane, Buzzi, Marta, Lazarevic, Vladimir, Gaïa, Nadia, Girard, Myriam, Renzi, Francesco, Renzi, Gesuele, Cherkaoui, Abdessalam, Schrenzel, Jacques

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Temperate Prophages Increase Bacterial Adhesin Expression and Virulence in an Experimental Model of Endocarditis Due to Staphylococcus aureus From the CC398 Lineage von Laumay, Floriane, Corvaglia, Anna-Rita, Diene, Seydina M, Girard, Myriam, Oechslin, Frank, van der Mee-Marquet, Nathalie, Entenza, José Manuel, François, Patrice

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Listeria monocytogenes infectious periaortitis: a case report from the infectious disease standpoint von Foulex, Aurélie, Coen, Matteo, Cherkaoui, Abdessalam, Lazarevic, Vladimir, Gaïa, Nadia, Leo, Stefano, Girard, Myriam, Mugnai, Damiano, Schrenzel, Jacques

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Daptomycin resistance mechanisms in clinically derived Staphylococcus aureus strains assessed by a combined transcriptomics and proteomics approach von Fischer, Adrien, Yang, Soo-Jin, Bayer, Arnold S., Vaezzadeh, Ali R., Herzig, Sébastien, Stenz, Ludwig, Girard, Myriam, Sakoulas, George, Scherl, Alexander, Yeaman, Michael R., Proctor, Richard A., Schrenzel, Jacques, François, Patrice

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Methicillin-susceptible ST398 Staphylococcus aureus responsible for bloodstream infections: an emerging human-adapted subclone? von Valentin-Domelier, Anne-Sophie, Girard, Myriam, Bertrand, Xavier, Violette, Jérémie, François, Patrice, Donnio, Pierre-Yves, Talon, Daniel, Quentin, Roland, Schrenzel, Jacques, van der Mee-Marquet, Nathalie

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Changes in the gut bacterial communities in colon cancer surgery patients: an observational study von Abbas, Mohamed, Gaïa, Nadia, Buchs, Nicolas C, Delaune, Vaihere, Girard, Myriam, Andrey, Diego O, Meyer, Jeremy, Schrenzel, Jacques, Ris, Frédéric, Harbarth, Stephan, Lazarevic, Vladimir

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When Bacterial Culture Fails, Metagenomics Can Help: A Case of Chronic Hepatic Brucelloma Assessed by Next-Generation Sequencing von Lazarevic, Vladimir, Gaïa, Nadia, Girard, Myriam, Leo, Stefano, Cherkaoui, Abdessalam, Renzi, Gesuele, Emonet, Stéphane, Jamme, Sharon, Ruppé, Etienne, Vijgen, Sandrine, Rubbia-Brandt, Laura, Toso, Christian, Schrenzel, Jacques

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Next-Generation Sequencing for the Diagnosis of Challenging Culture-Negative Endocarditis von Kolb, Manon, Lazarevic, Vladimir, Emonet, Stéphane, Calmy, Alexandra, Girard, Myriam, Gaïa, Nadia, Charretier, Yannick, Cherkaoui, Abdessalam, Keller, Peter, Huber, Christoph, Schrenzel, Jacques

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