Reprogramming of the macrophage transcriptome in response to interferon-gamma and Mycobacterium tuberculosis: signaling roles of nitric oxide synthase-2 and phagocyte oxidase von Ehrt, S, Schnappinger, D, Bekiranov, S, Drenkow, J, Shi, S, Gingeras, T R, Gaasterland, T, Schoolnik, G, Nathan, C

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Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse von Bernstein, Bradley E., Kamal, Michael, Lindblad-Toh, Kerstin, Bekiranov, Stefan, Bailey, Dione K., Huebert, Dana J., McMahon, Scott, Karlsson, Elinor K., Kulbokas, Edward J., Gingeras, Thomas R., Schreiber, Stuart L., Lander, Eric S.

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Mycobacterium Species Identification and Rifampin Resistance Testing with High-Density DNA Probe Arrays von TROESCH, A, NGUYEN, H, MIYADA, C. G, DESVARENNE, S, GINGERAS, T. R, KAPLAN, P. M, CROS, P, MABILAT, C

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Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs von Cawley, Simon, Bekiranov, Stefan, Ng, Huck H, Kapranov, Philipp, Sekinger, Edward A, Kampa, Dione, Piccolboni, Antonio, Sementchenko, Victor, Cheng, Jill, Williams, Alan J, Wheeler, Raymond, Wong, Brant, Drenkow, Jorg, Yamanaka, Mark, Patel, Sandeep, Brubaker, Shane, Tammana, Hari, Helt, Gregg, Struhl, Kevin, Gingeras, Thomas R

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Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 von Kampa, Dione, Cheng, Jill, Kapranov, Philipp, Yamanaka, Mark, Brubaker, Shane, Cawley, Simon, Drenkow, Jorg, Piccolboni, Antonio, Bekiranov, Stefan, Helt, Gregg, Tammana, Hari, Gingeras, Thomas R

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Large-Scale Transcriptional Activity in Chromosomes 21 and 22 von Kapranov, Philipp, Cawley, Simon E., Drenkow, Jorg, Bekiranov, Stefan, Strausberg, Robert L., Stephen P. A. Fodor, Gingeras, Thomas R.

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High density synthetic oligonucleotide arrays von Lipshutz, R J, Fodor, S P, Gingeras, T R, Lockhart, D J

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MyD88 primes macrophages for full-scale activation by interferon-gamma yet mediates few responses to Mycobacterium tuberculosis von Shi, Shuangping, Nathan, Carl, Schnappinger, Dirk, Drenkow, Jörg, Fuortes, Michele, Block, Ellen, Ding, Aihao, Gingeras, Thomas R, Schoolnik, Gary, Akira, Shizuo, Takeda, Kiyoshi, Ehrt, Sabine

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High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression von Batut, Philippe, Dobin, Alexander, Plessy, Charles, Carninci, Piero, Gingeras, Thomas R

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Important lessons from complex genomes von Gingeras, T R

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0411 Important lessons from complex genomes von Gingeras, T. R.

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Important lessons from complex genomes von Gingeras, T R

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S0100 Important lessons from complex genomes von Gingeras, T. R.

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Flexible use of high-density oligonucleotide arrays for single-nucleotide polymorphism discovery and validation von Dong, S, Wang, E, Hsie, L, Cao, Y, Chen, X, Gingeras, T R

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The Transcriptional Responses of Respiratory Epithelial Cells to Bordetella pertussis Reveal Host Defensive and Pathogen Counter-Defensive Strategies von Belcher, C E, Drenkow, J, Kehoe, B, Gingeras, T R, McNamara, N, Lemjabbar, H, Basbaum, C, Relman, D A

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Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays von Kozal, Michael J, Shah, Nila, Shen, Naiping, Yang, Robert, Fucini, Raymond, Merigan, Thomas C, Richman, Douglas D, Morris, Don, Hubbell, Earl, Chee, Mark, Gingeras, Thomas R

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Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays von Gingeras, T R, Ghandour, G, Wang, E, Berno, A, Small, P M, Drobniewski, F, Alland, D, Desmond, E, Holodniy, M, Drenkow, J

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De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements von Schlesinger, Felix, Smith, Andrew D, Gingeras, Thomas R, Hannon, Gregory J, Hodges, Emily

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Prokaryotic RNA preparation methods useful for high density array analysis: comparison of two approaches von Rosenow, Carsten, Saxena, Rini Mukherjee, Durst, Mark, Gingeras, Thomas R.

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Human immunodeficiency virus type 1 reverse transcriptase genotype and drug susceptibility changes in infected individuals receiving dideoxyinosine monotherapy for 1 to 2 years von WINTERS, M. A, SHAFER, R. W, JELLINGER, R. A, MAMTORA, G, GINGERAS, T, MERIGAN, T. C

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