In-Depth Characterization of the Clostridioides difficile Phosphoproteome to Identify Ser/Thr Kinase Substrates von Garcia-Garcia, Transito, Douché, Thibaut, Giai Gianetto, Quentin, Poncet, Sandrine, El Omrani, Nesrine, Smits, Wiep Klaas, Cuenot, Elodie, Matondo, Mariette, Martin-Verstraete, Isabelle

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Contribution of MALDI‐TOF mass spectrometry and machine learning including deep learning techniques for the detection of virulence factors of Clostridioides difficile strains von Godmer, Alexandre, Giai Gianetto, Quentin, Le Neindre, Killian, Latapy, Valentine, Bastide, Mathilda, Ehmig, Muriel, Lalande, Valérie, Veziris, Nicolas, Aubry, Alexandra, Barbut, Frédéric, Eckert, Catherine

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Reducing neutrophil exposure to oxygen allows their basal state maintenance von Injarabian, Louise, Skerniskyte, Jurate, Giai Gianetto, Quentin, Witko‐Sarsat, Véronique, Marteyn, Benoit S

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Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments von Giai Gianetto, Quentin, Combes, Florence, Ramus, Claire, Bruley, Christophe, Couté, Yohann, Burger, Thomas

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Five simple yet essential steps to correctly estimate the rate of false differentially abundant proteins in mass spectrometry analyses von Wieczorek, Samuel, Giai Gianetto, Quentin, Burger, Thomas

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Uses and misuses of the fudge factor in quantitative discovery proteomics von Giai Gianetto, Quentin, Couté, Yohann, Bruley, Christophe, Burger, Thomas

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RNase E and HupB dynamics foster mycobacterial cell homeostasis and fitness von Griego, Anna, Douché, Thibaut, Gianetto, Quentin Giai, Matondo, Mariette, Manina, Giulia

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The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis von Addi, Cyril, Presle, Adrien, Frémont, Stéphane, Cuvelier, Frédérique, Rocancourt, Murielle, Milin, Florine, Schmutz, Sandrine, Chamot-Rooke, Julia, Douché, Thibaut, Duchateau, Magalie, Giai Gianetto, Quentin, Salles, Audrey, Ménager, Hervé, Matondo, Mariette, Zimmermann, Pascale, Gupta-Rossi, Neetu, Echard, Arnaud

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Testing Instantaneous Causality in Presence of Nonconstant Unconditional Covariance von Giai Gianetto, Quentin, Raïssi, Hamdi

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Loss of CorA, the primary magnesium transporter of Salmonella, is alleviated by MgtA and PhoP-dependent compensatory mechanisms von Metaane, Selma, Monteil, Véronique, Douché, Thibaut, Giai Gianetto, Quentin, Matondo, Mariette, Maufrais, Corinne, Norel, Françoise

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A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment von Bernard, Clément, Locard-Paulet, Marie, Noël, Cyril, Duchateau, Magalie, Giai Gianetto, Quentin, Moumen, Bouziane, Rattei, Thomas, Hechard, Yann, Jensen, Lars Juhl, Matondo, Mariette, Samba-Louaka, Ascel

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Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape von Chang, Yuen-Yan, Stévenin, Virginie, Duchateau, Magalie, Giai Gianetto, Quentin, Hourdel, Veronique, Rodrigues, Cristina Dias, Matondo, Mariette, Reiling, Norbert, Enninga, Jost, Monack, Denise M

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CYP450 core involvement in multiple resistance strains of Aedes aegypti from French Guiana highlighted by proteomics, molecular and biochemical studies von Epelboin, Yanouk, Wang, Lanjiao, Giai Gianetto, Quentin, Choumet, Valérie, Gaborit, Pascal, Issaly, Jean, Guidez, Amandine, Douché, Thibaut, Chaze, Thibault, Matondo, Mariette, Dusfour, Isabelle

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Mtfp1 ablation enhances mitochondrial respiration and protects against hepatic steatosis von Patitucci, Cecilia, Hernández-Camacho, Juan Diego, Vimont, Elodie, Yde, Sonny, Cokelaer, Thomas, Chaze, Thibault, Giai Gianetto, Quentin, Matondo, Mariette, Gazi, Anastasia, Nemazanyy, Ivan, Stroud, David A., Hock, Daniella H., Donnarumma, Erminia, Wai, Timothy

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Purification of infection-associated macropinosomes by magnetic isolation for proteomic characterization von Stévenin, Virginie, Giai Gianetto, Quentin, Duchateau, Magalie, Matondo, Mariette, Enninga, Jost, Chang, Yuen-Yan

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Bacterial Membrane Vesicles as a Novel Strategy for Extrusion of Antimicrobial Bismuth Drug in Helicobacter pylori von Kumar, Sumith, Schmitt, Christine, Gorgette, Olivier, Marbouty, Martial, Duchateau, Magalie, Giai Gianetto, Quentin, Matondo, Mariette, Guigner, Jean-Michel, De Reuse, Hilde

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Using a multiomics approach to unravel a septic shock specific signature in skeletal muscle von Duceau, Baptiste, Blatzer, Michael, Bardon, Jean, Chaze, Thibault, Giai Gianetto, Quentin, Castelli, Florence, Fenaille, François, Duarte, Lucie, Lescot, Thomas, Tresallet, Christophe, Riou, Bruno, Matondo, Mariette, Langeron, Olivier, Rocheteau, Pierre, Chrétien, Fabrice, Bouglé, Adrien

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Proteomic analysis of plasma extracellular vesicles reveals mitochondrial stress upon HTLV-1 infection von Jeannin, Patricia, Chaze, Thibault, Giai Gianetto, Quentin, Matondo, Mariette, Gout, Olivier, Gessain, Antoine, Afonso, Philippe V.

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Contribution of machine learning for subspecies identification from Mycobacterium abscessus with MALDI‐TOF MS in solid and liquid media von Godmer, Alexandre, Bigey, Lise, Giai‐Gianetto, Quentin, Pierrat, Gautier, Mohammad, Noshine, Mougari, Faiza, Piarroux, Renaud, Veziris, Nicolas, Aubry, Alexandra

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Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides difficile von Garcia-Garcia, Transito, Poncet, Sandrine, Cuenot, Elodie, Douché, Thibaut, Giai Gianetto, Quentin, Peltier, Johann, Courtin, Pascal, Chapot-Chartier, Marie-Pierre, Matondo, Mariette, Dupuy, Bruno, Candela, Thomas, Martin-Verstraete, Isabelle

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