Chaste: an open source C++ library for computational physiology and biology von Mirams, Gary R, Arthurs, Christopher J, Bernabeu, Miguel O, Bordas, Rafel, Cooper, Jonathan, Corrias, Alberto, Davit, Yohan, Dunn, Sara-Jane, Fletcher, Alexander G, Harvey, Daniel G, Marsh, Megan E, Osborne, James M, Pathmanathan, Pras, Pitt-Francis, Joe, Southern, James, Zemzemi, Nejib, Gavaghan, David J

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Comparing individual-based approaches to modelling the self-organization of multicellular tissues von Osborne, James M, Fletcher, Alexander G, Pitt-Francis, Joe M, Maini, Philip K, Gavaghan, David J

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The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt von Kay, Sophie K, Harrington, Heather A, Shepherd, Sarah, Brennan, Keith, Dale, Trevor, Osborne, James M, Gavaghan, David J, Byrne, Helen M

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Retuning the Catalytic Bias and Overpotential of a [NiFe]-Hydrogenase via a Single Amino Acid Exchange at the Electron Entry/Exit Site von Adamson, Hope, Robinson, Martin, Wright, John J, Flanagan, Lindsey A, Walton, Julia, Elton, Darrell, Gavaghan, David J, Bond, Alan M, Roessler, Maxie M, Parkin, Alison

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Simulation of multiple ion channel block provides improved early prediction of compounds' clinical torsadogenic risk von Mirams, Gary R., Cui, Yi, Sher, Anna, Fink, Martin, Cooper, Jonathan, Heath, Bronagh M., McMahon, Nick C., Gavaghan, David J., Noble, Denis

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Implementing vertex dynamics models of cell populations in biology within a consistent computational framework von Fletcher, Alexander G., Osborne, James M., Maini, Philip K., Gavaghan, David J.

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Cardiac tissue slices: preparation, handling, and successful optical mapping von Wang, Ken, Lee, Peter, Mirams, Gary R, Sarathchandra, Padmini, Borg, Thomas K, Gavaghan, David J, Kohl, Peter, Bollensdorff, Christian

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A Parameter Representing Missing Charge Should Be Considered when Calibrating Action Potential Models von Barral, Yann-Stanislas H M, Shuttleworth, Joseph G, Clerx, Michael, Whittaker, Dominic G, Wang, Ken, Polonchuk, Liudmila, Gavaghan, David J, Mirams, Gary R

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Metabolic changes during carcinogenesis: Potential impact on invasiveness von Smallbone, Kieran, Gatenby, Robert A., Gillies, Robert J., Maini, Philip K., Gavaghan, David J.

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A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath von Dunn, Sara-Jane, Appleton, Paul L, Nelson, Scott A, Näthke, Inke S, Gavaghan, David J, Osborne, James M

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Ten simple rules for effective computational research von Osborne, James M, Bernabeu, Miguel O, Bruna, Maria, Calderhead, Ben, Cooper, Jonathan, Dalchau, Neil, Dunn, Sara-Jane, Fletcher, Alexander G, Freeman, Robin, Groen, Derek, Knapp, Bernhard, McInerny, Greg J, Mirams, Gary R, Pitt-Francis, Joe, Sengupta, Biswa, Wright, David W, Yates, Christian A, Gavaghan, David J, Emmott, Stephen, Deane, Charlotte

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Four Ways to Fit an Ion Channel Model von Clerx, Michael, Beattie, Kylie A., Gavaghan, David J., Mirams, Gary R.

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Evaluation of an in silico cardiac safety assay: Using ion channel screening data to predict QT interval changes in the rabbit ventricular wedge von Beattie, Kylie A., Luscombe, Chris, Williams, Geoff, Munoz-Muriedas, Jordi, Gavaghan, David J., Cui, Yi, Mirams, Gary R.

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A Voltammetric Perspective of Multi-Electron and Proton Transfer in Protein Redox Chemistry: Insights From Computational Analysis of Escherichia coli HypD Fourier Transformed Alter... von Dale-Evans, Alister R., Robinson, Martin J., Lloyd-Laney, Henry O., Gavaghan, David J., Bond, Alan M., Parkin, Alison

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Rapid Characterization of hERG Channel Kinetics I: Using an Automated High-Throughput System von Lei, Chon Lok, Clerx, Michael, Gavaghan, David J., Polonchuk, Liudmila, Mirams, Gary R., Wang, Ken

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Model-driven optimal experimental design for calibrating cardiac electrophysiology models von Lei, Chon Lok, Clerx, Michael, Gavaghan, David J., Mirams, Gary R.

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Ten simple rules for training scientists to make better software von Gallagher, Kit, Creswell, Richard, Lambert, Ben, Robinson, Martin, Lok Lei, Chon, Mirams, Gary R, Gavaghan, David J

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Rapid Characterization of hERG Channel Kinetics II: Temperature Dependence von Lei, Chon Lok, Clerx, Michael, Beattie, Kylie A., Melgari, Dario, Hancox, Jules C., Gavaghan, David J., Polonchuk, Liudmila, Wang, Ken, Mirams, Gary R.

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Sinusoidal voltage protocols for rapid characterisation of ion channel kinetics von Beattie, Kylie A., Hill, Adam P., Bardenet, Rémi, Cui, Yi, Vandenberg, Jamie I., Gavaghan, David J., Boer, Teun P., Mirams, Gary R.

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Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models? von Johnstone, Ross H, Chang, Eugene T.Y, Bardenet, Rémi, de Boer, Teun P, Gavaghan, David J, Pathmanathan, Pras, Clayton, Richard H, Mirams, Gary R

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