Mass Cytometry: Single Cells, Many Features von Spitzer, Matthew H., Nolan, Garry P.

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Single-Cell Trajectory Detection Uncovers Progression and Regulatory Coordination in Human B Cell Development von Bendall, Sean C., Davis, Kara L., Amir, El-ad David, Tadmor, Michelle D., Simonds, Erin F., Chen, Tiffany J., Shenfeld, Daniel K., Nolan, Garry P., Pe’er, Dana

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Cytometry by Time-of-Flight Shows Combinatorial Cytokine Expression and Virus-Specific Cell Niches within a Continuum of CD8 + T Cell Phenotypes von Newell, Evan W., Sigal, Natalia, Bendall, Sean C., Nolan, Garry P., Davis, Mark M.

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Deep Profiling of Mouse Splenic Architecture with CODEX Multiplexed Imaging von Goltsev, Yury, Samusik, Nikolay, Kennedy-Darling, Julia, Bhate, Salil, Hale, Matthew, Vazquez, Gustavo, Black, Sarah, Nolan, Garry P.

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Metal-isotope-tagged monoclonal antibodies for high-dimensional mass cytometry von Han, Guojun, Spitzer, Matthew H., Bendall, Sean C., Fantl, Wendy J., Nolan, Garry P.

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Single-cell mass cytometry reveals distinct populations of brain myeloid cells in mouse neuroinflammation and neurodegeneration models von Ajami, Bahareh, Samusik, Nikolay, Wieghofer, Peter, Ho, Peggy P., Crotti, Andrea, Bjornson, Zach, Prinz, Marco, Fantl, Wendy J., Nolan, Garry P., Steinman, Lawrence

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Structural Linkage between Ligand Discrimination and Receptor Activation by Type I Interferons von Thomas, Christoph, Moraga, Ignacio, Levin, Doron, Krutzik, Peter O., Podoplelova, Yulia, Trejo, Angelica, Lee, Choongho, Yarden, Ganit, Vleck, Susan E., Glenn, Jeffrey S., Nolan, Garry P., Piehler, Jacob, Schreiber, Gideon, Garcia, K. Christopher

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Coordinated Cellular Neighborhoods Orchestrate Antitumoral Immunity at the Colorectal Cancer Invasive Front von Schürch, Christian M., Bhate, Salil S., Barlow, Graham L., Phillips, Darci J., Noti, Luca, Zlobec, Inti, Chu, Pauline, Black, Sarah, Demeter, Janos, McIlwain, David R., Kinoshita, Shigemi, Samusik, Nikolay, Goltsev, Yury, Nolan, Garry P.

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Automated identification of stratifying signatures in cellular subpopulations von Bruggner, Robert V, Bodenmiller, Bernd, Dill, David L, Tibshirani, Robert J, Nolan, Garry P

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Three-dimensional intact-tissue sequencing of single-cell transcriptional states von Wang, Xiao, Allen, William E, Wright, Matthew A, Sylwestrak, Emily L, Samusik, Nikolay, Vesuna, Sam, Evans, Kathryn, Liu, Cindy, Ramakrishnan, Charu, Liu, Jia, Nolan, Garry P, Bava, Felice-Alessio, Deisseroth, Karl

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A Continuous Molecular Roadmap to iPSC Reprogramming through Progression Analysis of Single-Cell Mass Cytometry von Zunder, Eli R., Lujan, Ernesto, Goltsev, Yury, Wernig, Marius, Nolan, Garry P.

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Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma von Ji, Andrew L., Rubin, Adam J., Thrane, Kim, Jiang, Sizun, Reynolds, David L., Meyers, Robin M., Guo, Margaret G., George, Benson M., Mollbrink, Annelie, Bergenstråhle, Joseph, Larsson, Ludvig, Bai, Yunhao, Zhu, Bokai, Bhaduri, Aparna, Meyers, Jordan M., Rovira-Clavé, Xavier, Hollmig, S. Tyler, Aasi, Sumaira Z., Nolan, Garry P., Lundeberg, Joakim, Khavari, Paul A.

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Highly multiplexed simultaneous detection of RNAs and proteins in single cells von Frei, Andreas P, Bava, Felice-Alessio, Zunder, Eli R, Hsieh, Elena W Y, Chen, Shih-Yu, Nolan, Garry P, Gherardini, Pier Federico

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High-Dimensional Phenotypic Mapping of Human Dendritic Cells Reveals Interindividual Variation and Tissue Specialization von Alcántara-Hernández, Marcela, Leylek, Rebecca, Wagar, Lisa E., Engleman, Edgar G., Keler, Tibor, Marinkovich, M. Peter, Davis, Mark M., Nolan, Garry P., Idoyaga, Juliana

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A deep profiler's guide to cytometry von Bendall, Sean C, Nolan, Garry P, Roederer, Mario, Chattopadhyay, Pratip K

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Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis von Levine, Jacob H., Simonds, Erin F., Bendall, Sean C., Davis, Kara L., Amir, El-ad D., Tadmor, Michelle D., Litvin, Oren, Fienberg, Harris G., Jager, Astraea, Zunder, Eli R., Finck, Rachel, Gedman, Amanda L., Radtke, Ina, Downing, James R., Pe’er, Dana, Nolan, Garry P.

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Automated mapping of phenotype space with single-cell data von Samusik, Nikolay, Good, Zinaida, Spitzer, Matthew H, Davis, Kara L, Nolan, Garry P

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Computational solutions to large-scale data management and analysis von Schadt, Eric E, Linderman, Michael D, Sorenson, Jon, Lee, Lawrence, Nolan, Garry P

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Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma von Phillips, Darci, Matusiak, Magdalena, Gutierrez, Belén Rivero, Bhate, Salil S., Barlow, Graham L., Jiang, Sizun, Demeter, Janos, Smythe, Kimberly S., Pierce, Robert H., Fling, Steven P., Ramchurren, Nirasha, Cheever, Martin A., Goltsev, Yury, West, Robert B., Khodadoust, Michael S., Kim, Youn H., Schürch, Christian M., Nolan, Garry P.

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viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia von Amir, El-ad David, Davis, Kara L, Tadmor, Michelle D, Simonds, Erin F, Levine, Jacob H, Bendall, Sean C, Shenfeld, Daniel K, Krishnaswamy, Smita, Nolan, Garry P, Pe'er, Dana

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