High-resolution genetic mapping of putative causal interactions between regions of open chromatin von Kumasaka, Natsuhiko, Knights, Andrew J., Gaffney, Daniel J.

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Orbital-specific mapping of the ligand exchange dynamics of Fe(CO)5 in solution von Wernet, Ph, Kunnus, K., Josefsson, I., Rajkovic, I., Quevedo, W., Beye, M., Schreck, S., Grübel, S., Scholz, M., Nordlund, D., Zhang, W., Hartsock, R. W., Schlotter, W. F., Turner, J. J., Kennedy, B., Hennies, F., de Groot, F. M. F., Gaffney, K. J., Techert, S., Odelius, M., Föhlisch, A.

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Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer’s disease risk genes von Schwartzentruber, Jeremy, Cooper, Sarah, Liu, Jimmy Z., Barrio-Hernandez, Inigo, Bello, Erica, Kumasaka, Natsuhiko, Young, Adam M. H., Franklin, Robin J. M., Johnson, Toby, Estrada, Karol, Gaffney, Daniel J., Beltrao, Pedro, Bassett, Andrew

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Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response von Alasoo, Kaur, Rodrigues, Julia, Mukhopadhyay, Subhankar, Knights, Andrew J., Mann, Alice L., Kundu, Kousik, Hale, Christine, Dougan, Gordon, Gaffney, Daniel J.

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Dissection of artifactual and confounding glial signatures by single-cell sequencing of mouse and human brain von Marsh, Samuel E., Walker, Alec J., Kamath, Tushar, Dissing-Olesen, Lasse, Hammond, Timothy R., de Soysa, T. Yvanka, Young, Adam M. H., Murphy, Sarah, Abdulraouf, Abdulraouf, Nadaf, Naeem, Dufort, Connor, Walker, Alicia C., Lucca, Liliana E., Kozareva, Velina, Vanderburg, Charles, Hong, Soyon, Bulstrode, Harry, Hutchinson, Peter J., Gaffney, Daniel J., Hafler, David A., Franklin, Robin J. M., Macosko, Evan Z., Stevens, Beth

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A map of transcriptional heterogeneity and regulatory variation in human microglia von Young, Adam M. H., Kumasaka, Natsuhiko, Calvert, Fiona, Hammond, Timothy R., Knights, Andrew, Panousis, Nikolaos, Park, Jun Sung, Schwartzentruber, Jeremy, Liu, Jimmy, Kundu, Kousik, Segel, Michael, Murphy, Natalia A., McMurran, Christopher E., Bulstrode, Harry, Correia, Jason, Budohoski, Karol P., Joannides, Alexis, Guilfoyle, Mathew R., Trivedi, Rikin, Kirollos, Ramez, Morris, Robert, Garnett, Matthew R., Timofeev, Ivan, Jalloh, Ibrahim, Holland, Katherine, Mannion, Richard, Mair, Richard, Watts, Colin, Price, Stephen J., Kirkpatrick, Peter J., Santarius, Thomas, Mountjoy, Edward, Ghoussaini, Maya, Soranzo, Nicole, Bayraktar, Omer A., Stevens, Beth, Hutchinson, Peter J., Franklin, Robin J. M., Gaffney, Daniel J.

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Epithelial IL-22RA1-Mediated Fucosylation Promotes Intestinal Colonization Resistance to an Opportunistic Pathogen von Pham, Tu Anh N., Clare, Simon, Goulding, David, Arasteh, Julia M., Stares, Mark D., Browne, Hilary P., Keane, Jacqueline A., Page, Andrew J., Kumasaka, Natsuhiko, Kane, Leanne, Mottram, Lynda, Harcourt, Katherine, Hale, Christine, Arends, Mark J., Gaffney, Daniel J., Dougan, Gordon, Lawley, Trevor D.

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Probing ultrafast ππ/nπ internal conversion in organic chromophores via K-edge resonant absorption von Wolf, T. J. A., Myhre, R. H., Cryan, J. P., Coriani, S., Squibb, R. J., Battistoni, A., Berrah, N., Bostedt, C., Bucksbaum, P., Coslovich, G., Feifel, R., Gaffney, K. J., Grilj, J., Martinez, T. J., Miyabe, S., Moeller, S. P., Mucke, M., Natan, A., Obaid, R., Osipov, T., Plekan, O., Wang, S., Koch, H., Gühr, M.

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Controls of nucleosome positioning in the human genome von Gaffney, Daniel J, McVicker, Graham, Pai, Athma A, Fondufe-Mittendorf, Yvonne N, Lewellen, Noah, Michelini, Katelyn, Widom, Jonathan, Gilad, Yoav, Pritchard, Jonathan K

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DNA Sequence-Dependent Compartmentalization and Silencing of Chromatin at the Nuclear Lamina von Zullo, Joseph M., Demarco, Ignacio A., Piqué-Regi, Roger, Gaffney, Daniel J., Epstein, Charles B., Spooner, Chauncey J., Luperchio, Teresa R., Bernstein, Bradley E., Pritchard, Jonathan K., Reddy, Karen L., Singh, Harinder

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Direct observation of ultrafast hydrogen bond strengthening in liquid water von Yang, Jie, Dettori, Riccardo, Nunes, J. Pedro F., List, Nanna H., Biasin, Elisa, Centurion, Martin, Chen, Zhijiang, Cordones, Amy A., Deponte, Daniel P., Heinz, Tony F., Kozina, Michael E., Ledbetter, Kathryn, Lin, Ming-Fu, Lindenberg, Aaron M., Mo, Mianzhen, Nilsson, Anders, Shen, Xiaozhe, Wolf, Thomas J. A., Donadio, Davide, Gaffney, Kelly J., Martinez, Todd J., Wang, Xijie

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Large Angular Jump Mechanism Observed for Hydrogen Bond Exchange in Aqueous Perchlorate Solution von Ji, Minbiao, Odelius, Michael, Gaffney, K.J

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Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation von Jerber, Julie, Seaton, Daniel D., Cuomo, Anna S. E., Kumasaka, Natsuhiko, Haldane, James, Steer, Juliette, Patel, Minal, Pearce, Daniel, Andersson, Malin, Bonder, Marc Jan, Mountjoy, Ed, Ghoussaini, Maya, Lancaster, Madeline A., Marioni, John C., Merkle, Florian T., Gaffney, Daniel J., Stegle, Oliver

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Absolute Equation-of-State Measurement for Polystyrene from 25 to 60 Mbar Using a Spherically Converging Shock Wave von Döppner, T, Swift, D C, Kritcher, A L, Bachmann, B, Collins, G W, Chapman, D A, Hawreliak, J, Kraus, D, Nilsen, J, Rothman, S, Benedict, L X, Dewald, E, Fratanduono, D E, Gaffney, J A, Glenzer, S H, Hamel, S, Landen, O L, Lee, H J, LePape, S, Ma, T, MacDonald, M J, MacPhee, A G, Milathianaki, D, Millot, M, Neumayer, P, Sterne, P A, Tommasini, R, Falcone, R W

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Mexico City aerosol analysis during MILAGRO using high resolution aerosol mass spectrometry at the urban supersite (T0) – Part 1: Fine particle composition and organic source appor... von Aiken, A. C., Salcedo, D., Cubison, M. J., Huffman, J. A., DeCarlo, P. F., Ulbrich, I. M., Docherty, K. S., Sueper, D., Kimmel, J. R., Worsnop, D. R., Trimborn, A., Northway, M., Stone, E. A., Schauer, J. J., Volkamer, R. M., Fortner, E., de Foy, B., Wang, J., Laskin, A., Shutthanandan, V., Zheng, J., Zhang, R., Gaffney, J., Marley, N. A., Paredes-Miranda, G., Arnott, W. P., Molina, L. T., Sosa, G., Jimenez, J. L.

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An overview of the MILAGRO 2006 Campaign: Mexico City emissions and their transport and transformation von Molina, L. T., Madronich, S., Gaffney, J. S., Apel, E., de Foy, B., Fast, J., Ferrare, R., Herndon, S., Jimenez, J. L., Lamb, B., Osornio-Vargas, A. R., Russell, P., Schauer, J. J., Stevens, P. S., Volkamer, R., Zavala, M.

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Cell reprogramming shapes the mitochondrial DNA landscape von Wei, Wei, Gaffney, Daniel J., Chinnery, Patrick F.

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A survey of best practices for RNA-seq data analysis von Conesa, Ana, Madrigal, Pedro, Tarazona, Sonia, Gomez-Cabrero, David, Cervera, Alejandra, McPherson, Andrew, Szcześniak, Michał Wojciech, Gaffney, Daniel J, Elo, Laura L, Zhang, Xuegong, Mortazavi, Ali

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Imaging Atomic Structure and Dynamics with Ultrafast X-ray Scattering von Gaffney, K.J, Chapman, H.N

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Niacin-mediated rejuvenation of macrophage/microglia enhances remyelination of the aging central nervous system von Rawji, Khalil S., Young, Adam M.H., Ghosh, Tanay, Michaels, Nathan J., Mirzaei, Reza, Kappen, Janson, Kolehmainen, Kathleen L., Alaeiilkhchi, Nima, Lozinski, Brian, Mishra, Manoj K., Pu, Annie, Tang, Weiwen, Zein, Salma, Kaushik, Deepak K., Keough, Michael B., Plemel, Jason R., Calvert, Fiona, Knights, Andrew J., Gaffney, Daniel J., Tetzlaff, Wolfram, Franklin, Robin J. M., Yong, V. Wee

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