Regulation of genome organization and gene expression by nuclear mechanotransduction von Uhler, Caroline, Shivashankar, G. V.

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Regulation of nuclear architecture, mechanics, and nucleocytoplasmic shuttling of epigenetic factors by cell geometric constraints von Alisafaei, Farid, Jokhun, Doorgesh Sharma, Shivashankar, G. V., Shenoy, Vivek B.

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Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer’s disease von Zhang, Xinyi, Wang, Xiao, Shivashankar, G. V., Uhler, Caroline

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Predicting cell lineages using autoencoders and optimal transport von Yang, Karren Dai, Damodaran, Karthik, Venkatachalapathy, Saradha, Soylemezoglu, Ali C., Shivashankar, G. V., Uhler, Caroline

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Nuclear deformability and telomere dynamics are regulated by cell geometric constraints von Makhija, Ekta, Jokhun, D. S., Shivashankar, G. V.

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Cell geometric constraints induce modular gene-expression patterns via redistribution of HDAC3 regulated by actomyosin contractility von Jain, Nikhil, Iyer, K. Venkatesan, Kumar, Abhishek, Shivashankar, G. V.

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Mechano-genomic regulation of coronaviruses and its interplay with ageing von Uhler, Caroline, Shivashankar, G. V.

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Multi-domain translation between single-cell imaging and sequencing data using autoencoders von Yang, Karren Dai, Belyaeva, Anastasiya, Venkatachalapathy, Saradha, Damodaran, Karthik, Katcoff, Abigail, Radhakrishnan, Adityanarayanan, Shivashankar, G. V., Uhler, Caroline

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Unsupervised representation learning of chromatin images identifies changes in cell state and tissue organization in DCIS von Zhang, Xinyi, Venkatachalapathy, Saradha, Paysan, Daniel, Schaerer, Paulina, Tripodo, Claudio, Uhler, Caroline, Shivashankar, G. V.

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Chromatin Remodeling Due to Transient-Link-and-Pass Activity Enhances Subnuclear Dynamics von Das, Rakesh, Sakaue, Takahiro, Shivashankar, G V, Prost, Jacques, Hiraiwa, Tetsuya

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Actomyosin contractility as a mechanical checkpoint for cell state transitions von Venkatachalapathy, Saradha, Sreekumar, Dyuthi, Ratna, Prasuna, Shivashankar, G. V.

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Fibroblast rejuvenation by mechanical reprogramming and redifferentiation von Roy, Bibhas, Yuan, Luezhen, Lee, Yaelim, Bharti, Aradhana, Mitra, Aninda, Shivashankar, G. V.

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Chromosome Intermingling: Mechanical Hotspots for Genome Regulation von Uhler, Caroline, Shivashankar, G.V.

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Compressive force induces reversible chromatin condensation and cell geometry-dependent transcriptional response von Damodaran, Karthik, Venkatachalapathy, Saradha, Alisafaei, Farid, Radhakrishnan, A V, Sharma Jokhun, Doorgesh, Shenoy, Vivek B, Shivashankar, G V

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Lateral confined growth of cells activates Lef1 dependent pathways to regulate cell-state transitions von Yuan, Luezhen, Roy, Bibhas, Ratna, Prasuna, Uhler, Caroline, Shivashankar, G. V.

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Nuclear morphometrics and chromatin condensation patterns as disease biomarkers using a mobile microscope von Damodaran, Karthik, Crestani, Michele, Jokhun, Doorgesh Sharma, Shivashankar, G V

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Causal network models of SARS-CoV-2 expression and aging to identify candidates for drug repurposing von Belyaeva, Anastasiya, Cammarata, Louis, Radhakrishnan, Adityanarayanan, Squires, Chandler, Yang, Karren Dai, Shivashankar, G. V., Uhler, Caroline

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How cells respond to environmental cues - insights from bio-functionalized substrates von Ruprecht, Verena, Monzo, Pascale, Ravasio, Andrea, Yue, Zhang, Makhija, Ekta, Strale, Pierre Olivier, Gauthier, Nils, Shivashankar, G V, Studer, Vincent, Albiges-Rizo, Corinne, Viasnoff, Virgile

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Dynamics of passive and active particles in the cell nucleus von Hameed, Feroz M, Rao, Madan, Shivashankar, G V

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How enzymatic activity is involved in chromatin organization von Das, Rakesh, Sakaue, Takahiro, Shivashankar, G V, Prost, Jacques, Hiraiwa, Tetsuya

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