Alzheimer's disease: analyzing the missing heritability von Ridge, Perry G, Mukherjee, Shubhabrata, Crane, Paul K, Kauwe, John S K

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Composition and evolution of the vertebrate and mammalian selenoproteomes von Mariotti, Marco, Ridge, Perry G, Zhang, Yan, Lobanov, Alexei V, Pringle, Thomas H, Guigo, Roderic, Hatfield, Dolph L, Gladyshev, Vadim N

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Evaluating a large language model’s ability to solve programming exercises from an introductory bioinformatics course von Piccolo, Stephen R, Denny, Paul, Luxton-Reilly, Andrew, Payne, Samuel H, Ridge, Perry G

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Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight von Ebbert, Mark T W, Jensen, Tanner D, Jansen-West, Karen, Sens, Jonathon P, Reddy, Joseph S, Ridge, Perry G, Kauwe, John S K, Belzil, Veronique, Pregent, Luc, Carrasquillo, Minerva M, Keene, Dirk, Larson, Eric, Crane, Paul, Asmann, Yan W, Ertekin-Taner, Nilufer, Younkin, Steven G, Ross, Owen A, Rademakers, Rosa, Petrucelli, Leonard, Fryer, John D

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Short Sequence Aligner Benchmarking for Chromatin Research von Carter, John Lawrence, Stevens, Harlan, Ridge, Perry G., Johnson, Steven Michael

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JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm von Miller, Justin B, Pickett, Brandon D, Ridge, Perry G

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Germline Mutations in NFKB2 Implicate the Noncanonical NF-κB Pathway in the Pathogenesis of Common Variable Immunodeficiency von Chen, Karin, Coonrod, Emily M., Kumánovics, Attila, Franks, Zechariah F., Durtschi, Jacob D., Margraf, Rebecca L., Wu, Wilfred, Heikal, Nahla M., Augustine, Nancy H., Ridge, Perry G., Hill, Harry R., Jorde, Lynn B., Weyrich, Andrew S., Zimmerman, Guy A., Gundlapalli, Adi V., Bohnsack, John F., Voelkerding, Karl V.

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Comparative genomic analyses of copper transporters and cuproproteomes reveal evolutionary dynamics of copper utilization and its link to oxygen von Ridge, Perry G, Zhang, Yan, Gladyshev, Vadim N

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Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation von Kauwe, John S K, Bailey, Matthew H, Ridge, Perry G, Perry, Rachel, Wadsworth, Mark E, Hoyt, Kaitlyn L, Staley, Lyndsay A, Karch, Celeste M, Harari, Oscar, Cruchaga, Carlos, Ainscough, Benjamin J, Bales, Kelly, Pickering, Eve H, Bertelsen, Sarah, Fagan, Anne M, Holtzman, David M, Morris, John C, Goate, Alison M

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Codon Pairs are Phylogenetically Conserved: A comprehensive analysis of codon pairing conservation across the Tree of Life von Miller, Justin B, McKinnon, Lauren M, Whiting, Michael F, Kauwe, John S K, Ridge, Perry G

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Arabidopsis thaliana organelles mimic the T7 phage DNA replisome with specific interactions between Twinkle protein and DNA polymerases Pol1A and Pol1B von Morley, Stewart A, Peralta-Castro, Antolín, Brieba, Luis G, Miller, Justin, Ong, Kai Li, Ridge, Perry G, Oliphant, Amanda, Aldous, Stephen, Nielsen, Brent L

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Lingering Taxonomic Challenges Hinder Conservation and Management of Global Bonefishes von Pickett, Brandon D., Wallace, Elizabeth M., Ridge, Perry G., Kauwe, John S. K.

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Mitochondria and Alzheimer’s Disease: the Role of Mitochondrial Genetic Variation von Ridge, Perry G., Kauwe, John S. K.

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A comprehensive analysis of the phylogenetic signal in ramp sequences in 211 vertebrates von McKinnon, Lauren M., Miller, Justin B., Whiting, Michael F., Kauwe, John S. K., Ridge, Perry G.

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Population-based Analysis of Alzheimer’s Disease Risk Alleles Implicates Genetic Interactions von Ebbert, Mark T.W, Ridge, Perry G, Wilson, Andrew R, Sharp, Aaron R, Bailey, Matthew, Norton, Maria C, Tschanz, JoAnn T, Munger, Ronald G, Corcoran, Christopher D, Kauwe, John S.K

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Linkage, whole genome sequence, and biological data implicate variants in RAB10 in Alzheimer's disease resilience von Ridge, Perry G, Karch, Celeste M, Hsu, Simon, Arano, Ivan, Teerlink, Craig C, Ebbert, Mark T W, Gonzalez Murcia, Josue D, Farnham, James M, Damato, Anna R, Allen, Mariet, Wang, Xue, Harari, Oscar, Fernandez, Victoria M, Guerreiro, Rita, Bras, Jose, Hardy, John, Munger, Ronald, Norton, Maria, Sassi, Celeste, Singleton, Andrew, Younkin, Steven G, Dickson, Dennis W, Golde, Todd E, Price, Nathan D, Ertekin-Taner, Nilüfer, Cruchaga, Carlos, Goate, Alison M, Corcoran, Christopher, Tschanz, JoAnn, Cannon-Albright, Lisa A, Kauwe, John S K

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Influence of Coding Variability in APP-Aβ Metabolism Genes in Sporadic Alzheimer's Disease von Sassi, Celeste, Ridge, Perry G, Nalls, Michael A, Gibbs, Raphael, Ding, Jinhui, Lupton, Michelle K, Troakes, Claire, Lunnon, Katie, Al-Sarraj, Safa, Brown, Kristelle S, Medway, Christopher, Lord, Jenny, Turton, James, Morgan, Kevin, Powell, John F, Kauwe, John S, Cruchaga, Carlos, Bras, Jose, Goate, Alison M, Singleton, Andrew B, Guerreiro, Rita, Hardy, John

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De novo genome assembly of the marine teleost, bluefin trevally (Caranx melampygus) von Pickett, Brandon D, Glass, Jessica R, Ridge, Perry G, Kauwe, John S K

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CAM: an alignment-free method to recover phylogenies using codon aversion motifs von Miller, Justin B, McKinnon, Lauren M, Whiting, Michael F, Ridge, Perry G

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Mitochondrial genomic analysis of late onset Alzheimer's disease reveals protective haplogroups H6A1A/H6A1B: the Cache County Study on Memory in Aging von Ridge, Perry G, Maxwell, Taylor J, Corcoran, Christopher D, Norton, Maria C, Tschanz, Joann T, O'Brien, Elizabeth, Kerber, Richard A, Cawthon, Richard M, Munger, Ronald G, Kauwe, John S K

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