Intrinsic K-Ras dynamics: A novel molecular dynamics data analysis method shows causality between residue pair motions von Vatansever, Sezen, Gümüş, Zeynep H., Erman, Burak

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Chemokine 25-induced signaling suppresses colon cancer invasion and metastasis von Chen, Huanhuan Joyce, Edwards, Robert, Tucci, Serena, Bu, Pengcheng, Milsom, Jeff, Lee, Sang, Edelmann, Winfried, Gümüs, Zeynep H, Shen, Xiling, Lipkin, Steven

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KDM2B, an H3K36-specific demethylase, regulates apoptotic response of GBM cells to TRAIL von Kurt, Ibrahim Cagri, Sur, Ilknur, Kaya, Ezgi, Cingoz, Ahmet, Kazancioglu, Selena, Kahya, Zeynep, Toparlak, Omer Duhan, Senbabaoglu, Filiz, Kaya, Zeynep, Ozyerli, Ezgi, Karahüseyinoglu, Sercin, Lack, Nathan A, Gümüs, Zeynep H, Onder, Tamer T, Bagci-Onder, Tugba

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iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D von Liluashvili, Vaja, Kalayci, Selim, Fluder, Eugene, Wilson, Manda, Gabow, Aaron, Gümüş, Zeynep H.

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miR-23a promotes the transition from indolent to invasive colorectal cancer von Jahid, Sohail, Sun, Jian, Edwards, Robert A, Dizon, Diana, Panarelli, Nicole C, Milsom, Jeffrey W, Sikandar, Shaheen S, Gümüs, Zeynep H, Lipkin, Steven M

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Shielding Behaviors and Analysis of Mechanical Treatment of Cements Containing Nanosized Powders von Mutuk, H., Mutuk, T., Gümüş, H., Mesci Oktay, B.

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Prevalence of Metabolic Syndrome and Its Association with Erectile Dysfunction Among Urologic Patients: Metabolic Backgrounds of Erectile Dysfunction von Bal, Kaan, Öder, Mehmet, Şahin, Ali S, Karataş, Cüneyt T, Demir, Ömer, Can, Ertan, Gümüş, Bilali H, Özer, Kutan, Şahin, O.ğuz, Esen, A. Adil

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Gene expression elucidates functional impact of polygenic risk for schizophrenia von Fromer, Menachem, Roussos, Panos, Sieberts, Solveig K, Johnson, Jessica S, Kavanagh, David H, Perumal, Thanneer M, Ruderfer, Douglas M, Oh, Edwin C, Topol, Aaron, Shah, Hardik R, Klei, Lambertus L, Kramer, Robin, Pinto, Dalila, Gümüş, Zeynep H, Cicek, A Ercument, Dang, Kristen K, Browne, Andrew, Lu, Cong, Xie, Lu, Readhead, Ben, Stahl, Eli A, Xiao, Jianqiu, Parvizi, Mahsa, Hamamsy, Tymor, Fullard, John F, Wang, Ying-Chih, Mahajan, Milind C, Derry, Jonathan M J, Dudley, Joel T, Hemby, Scott E, Logsdon, Benjamin A, Talbot, Konrad, Raj, Towfique, Bennett, David A, De Jager, Philip L, Zhu, Jun, Zhang, Bin, Sullivan, Patrick F, Chess, Andrew, Purcell, Shaun M, Shinobu, Leslie A, Mangravite, Lara M, Toyoshiba, Hiroyoshi, Gur, Raquel E, Hahn, Chang-Gyu, Lewis, David A, Haroutunian, Vahram, Peters, Mette A, Lipska, Barbara K, Buxbaum, Joseph D, Schadt, Eric E, Hirai, Keisuke, Roeder, Kathryn, Brennand, Kristen J, Katsanis, Nicholas, Domenici, Enrico, Devlin, Bernie, Sklar, Pamela

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Effects of cigarette smoke on the human oral mucosal transcriptome von Boyle, Jay O, Gümüs, Zeynep H, Kacker, Ashutosh, Choksi, Vishal L, Bocker, Jennifer M, Zhou, Xi Kathy, Yantiss, Rhonda K, Hughes, Duncan B, Du, Baoheng, Judson, Benjamin L, Subbaramaiah, Kotha, Dannenberg, Andrew J

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SCLC: Epidemiology, Risk Factors, Genetic Susceptibility, Molecular Pathology, Screening, and Early Detection von Wang, Qian, Gümüş, Zeynep H., Colarossi, Cristina, Memeo, Lorenzo, Wang, Xintong, Kong, Chung Yin, Boffetta, Paolo

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A Machine Learning Approach for Hot-Spot Detection at Protein-Protein Interfaces von Melo, Rita, Fieldhouse, Robert, Melo, André, Correia, João D G, Cordeiro, Maria Natália D S, Gümüş, Zeynep H, Costa, Joaquim, Bonvin, Alexandre M J J, Moreira, Irina S

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A microRNA miR-34a-Regulated Bimodal Switch Targets Notch in Colon Cancer Stem Cells von Bu, Pengcheng, Chen, Kai-Yuan, Chen, Joyce Huan, Wang, Lihua, Walters, Jewell, Shin, Yong Jun, Goerger, Julian P., Sun, Jian, Witherspoon, Mavee, Rakhilin, Nikolai, Li, Jiahe, Yang, Herman, Milsom, Jeff, Lee, Sang, Zipfel, Warren, Jin, Moonsoo M., Gümüş, Zeynep H., Lipkin, Steven M., Shen, Xiling

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Rapid Temporal Changes in the Expression of a Set of Neuromodulatory Genes During Alcohol Withdrawal in the Dorsal Vagal Complex: Molecular Evidence of Homeostatic Disturbance von Freeman, Kate, Staehle, Mary M., Gümüş, Zeynep H., Vadigepalli, Rajanikanth, Gonye, Gregory E., Nichols, Carmen N., Ogunnaike, Babatunde A., Hoek, Jan B., Schwaber, James S.

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Rare, Pathogenic Germline Variants in Fanconi Anemia Genes Increase Risk for Squamous Lung Cancer von Esai Selvan, Myvizhi, Klein, Robert J, Gümüş, Zeynep H

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Comparative effects of oncogenic mutations G12C, G12V, G13D, and Q61H on local conformations and dynamics of K-Ras von Vatansever, Sezen, Erman, Burak, Gümüş, Zeynep H.

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Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics von Khurana, Ekta, Fu, Yao, Colonna, Vincenza, Mu, Xinmeng Jasmine, Kang, Hyun Min, Lappalainen, Tuuli, Sboner, Andrea, Lochovsky, Lucas, Chen, Jieming, Harmanci, Arif, Das, Jishnu, Abyzov, Alexej, Balasubramanian, Suganthi, Beal, Kathryn, Chakravarty, Dimple, Challis, Daniel, Chen, Yuan, Clarke, Declan, Clarke, Laura, Cunningham, Fiona, Evani, Uday S., Flicek, Paul, Fragoza, Robert, Garrison, Erik, Gibbs, Richard, Gümüş, Zeynep H., Herrero, Javier, Kitabayashi, Naoki, Kong, Yong, Lage, Kasper, Liluashvili, Vaja, Lipkin, Steven M., MacArthur, Daniel G., Marth, Gabor, Muzny, Donna, Pers, Tune H., Ritchie, Graham R. S., Rosenfeld, Jeffrey A., Sisu, Cristina, Wei, Xiaomu, Wilson, Michael, Xue, Yali, Yu, Fuli, Dermitzakis, Emmanouil T., Yu, Haiyuan, Rubin, Mark A., Tyler-Smith, Chris, Gerstein, Mark

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Structural and Spectroscopic Characterization of 3-[4-(Trifluoromethyl)Phenyl]-3a,4,8,8a-Tetrahydro-6H-[1,3] Dioxepino[5,6-d][1,2]Oxazole Compound: An Experimental and Density Func... von Gümüş, H., Tekin, N., Kara, Y. S.

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ProNetView‐ccRCC: A Web‐Based Portal to Interactively Explore Clear Cell Renal Cell Carcinoma Proteogenomics Networks von Kalayci, Selim, Petralia, Francesca, Wang, Pei, Gümüş, Zeynep H.

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SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots von Moreira, Irina S., Koukos, Panagiotis I., Melo, Rita, Almeida, Jose G., Preto, Antonio J., Schaarschmidt, Joerg, Trellet, Mikael, Gümüş, Zeynep H., Costa, Joaquim, Bonvin, Alexandre M. J. J.

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Ancestral reconstruction reveals mechanisms of ERK regulatory evolution von Sang, Dajun, Pinglay, Sudarshan, Wiewiora, Rafal P, Selvan, Myvizhi E, Lou, Hua Jane, Chodera, John D, Turk, Benjamin E, Gümüş, Zeynep H, Holt, Liam J

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