Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss von den Bakker, Henk C, Cummings, Craig A, Ferreira, Vania, Vatta, Paolo, Orsi, Renato H, Degoricija, Lovorka, Barker, Melissa, Petrauskene, Olga, Furtado, Manohar R, Wiedmann, Martin

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Comparative analysis of genome sequences covering the seven cronobacter species von Joseph, Susan, Desai, Prerak, Ji, Yongmei, Cummings, Craig A, Shih, Rita, Degoricija, Lovorka, Rico, Alain, Brzoska, Pius, Hamby, Stephen E, Masood, Naqash, Hariri, Sumyya, Sonbol, Hana, Chuzhanova, Nadia, McClelland, Michael, Furtado, Manohar R, Forsythe, Stephen J

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Assuring the quality of next-generation sequencing in clinical laboratory practice von Gargis, Amy S, Kalman, Lisa, Berry, Meredith W, Bick, David P, Dimmock, David P, Hambuch, Tina, Lu, Fei, Lyon, Elaine, Voelkerding, Karl V, Zehnbauer, Barbara A, Agarwala, Richa, Bennett, Sarah F, Chen, Bin, Chin, Ephrem L H, Compton, John G, Das, Soma, Farkas, Daniel H, Ferber, Matthew J, Funke, Birgit H, Furtado, Manohar R, Ganova-Raeva, Lilia M, Geigenmüller, Ute, Gunselman, Sandra J, Hegde, Madhuri R, Johnson, Philip L F, Kasarskis, Andrew, Kulkarni, Shashikant, Lenk, Thomas, Liu, C S Jonathan, Manion, Megan, Manolio, Teri A, Mardis, Elaine R, Merker, Jason D, Rajeevan, Mangalathu S, Reese, Martin G, Rehm, Heidi L, Simen, Birgitte B, Yeakley, Joanne M, Zook, Justin M, Lubin, Ira M

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Progress toward an efficient panel of SNPs for ancestry inference von Kidd, Kenneth K, Speed, William C, Pakstis, Andrew J, Furtado, Manohar R, Fang, Rixun, Madbouly, Abeer, Maiers, Martin, Middha, Mridu, Friedlaender, Françoise R, Kidd, Judith R

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Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica von den Bakker, Henk C, Moreno Switt, Andrea I, Govoni, Gregory, Cummings, Craig A, Ranieri, Matthew L, Degoricija, Lovorka, Hoelzer, Karin, Rodriguez-Rivera, Lorraine D, Brown, Stephanie, Bolchacova, Elena, Furtado, Manohar R, Wiedmann, Martin

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Mutability of Y-Chromosomal Microsatellites: Rates, Characteristics, Molecular Bases, and Forensic Implications von Ballantyne, Kaye N., Goedbloed, Miriam, Fang, Rixun, Schaap, Onno, Lao, Oscar, Wollstein, Andreas, Choi, Ying, van Duijn, Kate, Vermeulen, Mark, Brauer, Silke, Decorte, Ronny, Poetsch, Micaela, von Wurmb-Schwark, Nicole, de Knijff, Peter, Labuda, Damian, Vézina, Hélène, Knoblauch, Hans, Lessig, Rüdiger, Roewer, Lutz, Ploski, Rafal, Dobosz, Tadeusz, Henke, Lotte, Henke, Jürgen, Furtado, Manohar R., Kayser, Manfred

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Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission von Moreno Switt, Andrea I, den Bakker, Henk C, Cummings, Craig A, Rodriguez-Rivera, Lorraine D, Govoni, Gregory, Raneiri, Matthew L, Degoricija, Lovorka, Brown, Stephanie, Hoelzer, Karin, Peters, Joseph E, Bolchacova, Elena, Furtado, Manohar R, Wiedmann, Martin

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Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus von Driebe, Elizabeth M, Sahl, Jason W, Roe, Chandler, Bowers, Jolene R, Schupp, James M, Gillece, John D, Kelley, Erin, Price, Lance B, Pearson, Talima R, Hepp, Crystal M, Brzoska, Pius M, Cummings, Craig A, Furtado, Manohar R, Andersen, Paal S, Stegger, Marc, Engelthaler, David M, Keim, Paul S

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A Whole-Genome Single Nucleotide Polymorphism-Based Approach To Trace and Identify Outbreaks Linked to a Common Salmonella enterica subsp. enterica Serovar Montevideo Pulsed-Field... von DEN BAKKER, Henk C, MORENO SWITT, Andrea I, SCHOONMAKER-BOPP, Dianna, MUSSER, Kimberlee A, VILLAMIL, Elizabeth, WAECHTER, Haena, KORNSTEIN, Laura, FURTADO, Manohar R, WIEDMANN, Martin, CUMMINGS, Craig A, HOELZER, Karin, DEGORICIJA, Lovorka, RODRIGUEZ-RIVERA, Lorraine D, WRIGHT, Emily M, RIXUN FANG, DAVIS, Margaret, ROOT, Tim

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SARS-CoV-2 variants of concern surveillance including Omicron using RT-PCR–based genotyping offers comparable performance to whole genome sequencing von Vanoni, Simone, Matulevicius, Arnoldas, Avdiu, Besard, Scantamburlo, Giada, Ulekleiv, Camilla, Brzoska, Pius M., Furtado, Manohar R., Feenstra, Jelena D. M., Rico, Alain, Gandhi, Manoj, Giacobazzi, Elisabetta, Masi, Elisa, Paulmichl, Markus, Nofziger, Charity

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Mini-haplotypes as lineage informative SNPs and ancestry inference SNPs von PAKSTIS, Andrew J, RIXUN FANG, FURTADO, Manohar R, KIDD, Judith R, KIDD, Kenneth K

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Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States von Rodriguez-Rivera, Lorraine D, Moreno Switt, Andrea I, Degoricija, Lovorka, Fang, Rixun, Cummings, Craig A, Furtado, Manohar R, Wiedmann, Martin, den Bakker, Henk C

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Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR® Yfiler® PCR amplification kit von Goedbloed, Miriam, Vermeulen, Mark, Fang, Rixun N., Lembring, Maria, Wollstein, Andreas, Ballantyne, Kaye, Lao, Oscar, Brauer, Silke, Krüger, Carmen, Roewer, Lutz, Lessig, Rüdiger, Ploski, Rafal, Dobosz, Tadeusz, Henke, Lotte, Henke, Jürgen, Furtado, Manohar R., Kayser, Manfred

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Persistence of HIV-1 Transcription in Peripheral-Blood Mononuclear Cells in Patients Receiving Potent Antiretroviral Therapy von Furtado, Manohar R, Callaway, Duncan S, Phair, John P, Kunstman, Kevin J, Stanton, Jennifer L, Macken, Catherine A, Perelson, Alan S, Wolinsky, Steven M

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Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona von Bowers, Jolene R, Driebe, Elizabeth M, Nibecker, Jennifer L, Wojack, Bette R, Sarovich, Derek S, Wong, Ada H, Brzoska, Pius M, Hubert, Nathaniel, Knadler, Andrew, Watson, Lindsey M, Wagner, David M, Furtado, Manohar R, Saubolle, Michael, Engelthaler, David M, Keim, Paul S

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Developmental Validation of the PrepFiler™ Forensic DNA Extraction Kit for Extraction of Genomic DNA from Biological Samples von Brevnov, Maxim G., Pawar, Hemant S., Mundt, Janna, Calandro, Lisa M., Furtado, Manohar R., Shewale, Jaiprakash G.

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Escherichia coli Serotype O55:H7 Diversity Supports Parallel Acquisition of Bacteriophage at Shiga Toxin Phage Insertion Sites during Evolution of the O157:H7 Lineage von Kyle, Jennifer L, Cummings, Craig A, Parker, Craig T, Quiñones, Beatriz, Vatta, Paolo, Newton, Elizabeth, Huynh, Steven, Swimley, Michelle, Degoricija, Lovorka, Barker, Melissa, Fontanoz, Samar, Nguyen, Kimberly, Patel, Ronak, Fang, Rixun, Tebbs, Robert, Petrauskene, Olga, Furtado, Manohar, Mandrell, Robert E

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Developmental Validation of the Quantifiler® Duo DNA Quantification Kit for Simultaneous Quantification of Total Human and Human Male DNA and Detection of PCR Inhibitors in Biologi... von Barbisin, Maura, Fang, Rixun, O'Shea, Cristin E., Calandro, Lisa M., Furtado, Manohar R., Shewale, Jaiprakash G.

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A Sample Extraction Method for Faster, More Sensitive PCR-Based Detection of Pathogens in Blood Culture von Regan, John F, Furtado, Manohar R, Brevnov, Maxim G, Jordan, Jeanne A

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SNPs for a universal individual identification panel von Pakstis, Andrew J, Speed, William C, Fang, Rixun, Hyland, Fiona C. L, Furtado, Manohar R, Kidd, Judith R, Kidd, Kenneth K

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