The role of transcription in shaping the spatial organization of the genome von van Steensel, Bas, Furlong, Eileen E. M.

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Transcription factors: from enhancer binding to developmental control von Spitz, François, Furlong, Eileen E. M.

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Developmental enhancers and chromosome topology von Furlong, Eileen E M, Levine, Michael

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Enhancer loops appear stable during development and are associated with paused polymerase von Ghavi-Helm, Yad, Klein, Felix A., Pakozdi, Tibor, Ciglar, Lucia, Noordermeer, Daan, Huber, Wolfgang, Furlong, Eileen E. M.

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The road ahead in genetics and genomics von McGuire, Amy L., Gabriel, Stacey, Tishkoff, Sarah A., Wonkam, Ambroise, Chakravarti, Aravinda, Furlong, Eileen E. M., Treutlein, Barbara, Meissner, Alexander, Chang, Howard Y., López-Bigas, Núria, Segal, Eran, Kim, Jin-Soo

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The cis-regulatory dynamics of embryonic development at single-cell resolution von Cusanovich, Darren A., Reddington, James P., Garfield, David A., Daza, Riza M., Aghamirzaie, Delasa, Marco-Ferreres, Raquel, Pliner, Hannah A., Christiansen, Lena, Qiu, Xiaojie, Steemers, Frank J., Trapnell, Cole, Shendure, Jay, Furlong, Eileen E. M.

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Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression von Ghavi-Helm, Yad, Jankowski, Aleksander, Meiers, Sascha, Viales, Rebecca R., Korbel, Jan O., Furlong, Eileen E. M.

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Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development von Bonn, Stefan, Zinzen, Robert P, Girardot, Charles, Gustafson, E Hilary, Perez-Gonzalez, Alexis, Delhomme, Nicolas, Ghavi-Helm, Yad, Wilczyński, Bartek, Riddell, Andrew, Furlong, Eileen E M

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Combinatorial binding predicts spatio-temporal cis-regulatory activity von Zinzen, Robert P., Girardot, Charles, Gagneur, Julien, Braun, Martina, Furlong, Eileen E. M.

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Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase? von Mir, Mustafa, Bickmore, Wendy, Furlong, Eileen E M, Narlikar, Geeta

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Ultrasensitive proteome analysis using paramagnetic bead technology von Hughes, Christopher S, Foehr, Sophia, Garfield, David A, Furlong, Eileen E, Steinmetz, Lars M, Krijgsveld, Jeroen

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A Versatile, Low-Cost, Multiway Microfluidic Sorter for Droplets, Cells, and Embryos von Utharala, Ramesh, Tseng, Qingzong, Furlong, Eileen E. M, Merten, Christoph A

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Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers von Girardot, Charles, Scholtalbers, Jelle, Sauer, Sajoscha, Su, Shu-Yi, Furlong, Eileen E M

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Conservation of transcription factor binding specificities across 600 million years of bilateria evolution von Nitta, Kazuhiro R, Jolma, Arttu, Yin, Yimeng, Morgunova, Ekaterina, Kivioja, Teemu, Akhtar, Junaid, Hens, Korneel, Toivonen, Jarkko, Deplancke, Bart, Furlong, Eileen E M, Taipale, Jussi

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scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation von Heinen, Tobias, Secchia, Stefano, Reddington, James P, Zhao, Bingqing, Furlong, Eileen E M, Stegle, Oliver

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easyRNASeq: a bioconductor package for processing RNA-Seq data von DELHOMME, Nicolas, PADIOLEAU, Ismaël, FURLONG, Eileen E, STEINMETZ, Lars M

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Opbp is a new architectural/insulator protein required for ribosomal gene expression von Zolotarev, Nikolay, Maksimenko, Oksana, Kyrchanova, Olga, Sokolinskaya, Elena, Osadchiy, Igor, Girardot, Charles, Bonchuk, Artem, Ciglar, Lucia, Furlong, Eileen E M, Georgiev, Pavel

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Genetic variants regulating expression levels and isoform diversity during embryogenesis von Cannavò, Enrico, Koelling, Nils, Harnett, Dermot, Garfield, David, Casale, Francesco P., Ciglar, Lucia, Gustafson, Hilary E., Viales, Rebecca R., Marco-Ferreres, Raquel, Degner, Jacob F., Zhao, Bingqing, Stegle, Oliver, Birney, Ewan, Furlong, Eileen E. M.

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Dual functionality of cis -regulatory elements as developmental enhancers and Polycomb response elements von Erceg, Jelena, Pakozdi, Tibor, Marco-Ferreres, Raquel, Ghavi-Helm, Yad, Girardot, Charles, Bracken, Adrian P, Furlong, Eileen E M

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Cell type–specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP von Bonn, Stefan, Zinzen, Robert P, Perez-Gonzalez, Alexis, Riddell, Andrew, Gavin, Anne-Claude, Furlong, Eileen E M

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