Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck von Braun, Katarina M, Moreno, Gage K, Halfmann, Peter J, Hodcroft, Emma B, Baker, David A, Boehm, Emma C, Weiler, Andrea M, Haj, Amelia K, Hatta, Masato, Chiba, Shiho, Maemura, Tadashi, Kawaoka, Yoshihiro, Koelle, Katia, O'Connor, David H, Friedrich, Thomas C

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Impact of Repeated Vaccination on Vaccine Effectiveness Against Influenza A(H3N2) and B During 8 Seasons von McLean, Huong Q., Thompson, Mark G., Sundaram, Maria E., Meece, Jennifer K., McClure, David L., Friedrich, Thomas C., Belongia, Edward A.

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Acute SARS-CoV-2 infections harbor limited within-host diversity and transmit via tight transmission bottlenecks von Braun, Katarina M, Moreno, Gage K, Wagner, Cassia, Accola, Molly A, Rehrauer, William M, Baker, David A, Koelle, Katia, O'Connor, David H, Bedford, Trevor, Friedrich, Thomas C, Moncla, Louise H

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Antibody-Dependent Cellular Cytotoxicity Is Associated with Control of Pandemic H1N1 Influenza Virus Infection of Macaques von Jegaskanda, Sinthujan, Weinfurter, Jason T, Friedrich, Thomas C, Kent, Stephen J

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A rhesus macaque model of Asian-lineage Zika virus infection von Dudley, Dawn M., Aliota, Matthew T., Mohr, Emma L., Weiler, Andrea M., Lehrer-Brey, Gabrielle, Weisgrau, Kim L., Mohns, Mariel S., Breitbach, Meghan E., Rasheed, Mustafa N., Newman, Christina M., Gellerup, Dane D., Moncla, Louise H., Post, Jennifer, Schultz-Darken, Nancy, Schotzko, Michele L., Hayes, Jennifer M., Eudailey, Josh A., Moody, M. Anthony, Permar, Sallie R., O’Connor, Shelby L., Rakasz, Eva G., Simmons, Heather A., Capuano, Saverio, Golos, Thaddeus G., Osorio, Jorge E., Friedrich, Thomas C., O’Connor, David H.

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Reorganization and expansion of the nidoviral family Arteriviridae von Kuhn, Jens H, Lauck, Michael, Bailey, Adam L, Shchetinin, Alexey M, Vishnevskaya, Tatyana V, Bào, Yīmíng, Ng, Terry Fei Fan, LeBreton, Matthew, Schneider, Bradley S, Gillis, Amethyst, Tamoufe, Ubald, Diffo, Joseph Le Doux, Takuo, Jean Michel, Kondov, Nikola O, Coffey, Lark L, Wolfe, Nathan D, Delwart, Eric, Clawson, Anna N, Postnikova, Elena, Bollinger, Laura, Lackemeyer, Matthew G, Radoshitzky, Sheli R, Palacios, Gustavo, Wada, Jiro, Shevtsova, Zinaida V, Jahrling, Peter B, Lapin, Boris A, Deriabin, Petr G, Dunowska, Magdalena, Alkhovsky, Sergey V, Rogers, Jeffrey, Friedrich, Thomas C, O’Connor, David H, Goldberg, Tony L

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Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in Cambodia von Moncla, Louise H, Bedford, Trevor, Dussart, Philippe, Horm, Srey Viseth, Rith, Sareth, Buchy, Philippe, Karlsson, Erik A, Li, Lifeng, Liu, Yongmei, Zhu, Huachen, Guan, Yi, Friedrich, Thomas C, Horwood, Paul F

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Optimizing direct RT-LAMP to detect transmissible SARS-CoV-2 from primary nasopharyngeal swab samples von Dudley, Dawn M, Newman, Christina M, Weiler, Andrea M, Ramuta, Mitchell D, Shortreed, Cecilia G, Heffron, Anna S, Accola, Molly A, Rehrauer, William M, Friedrich, Thomas C, O'Connor, David H

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Oil immersed lossless total analysis system for integrated RNA extraction and detection of SARS-CoV-2 von Juang, Duane S., Juang, Terry D., Dudley, Dawn M., Newman, Christina M., Accola, Molly A., Rehrauer, William M., Friedrich, Thomas C., O’Connor, David H., Beebe, David J.

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Zika viruses of African and Asian lineages cause fetal harm in a mouse model of vertical transmission von Jaeger, Anna S, Murrieta, Reyes A, Goren, Lea R, Crooks, Chelsea M, Moriarty, Ryan V, Weiler, Andrea M, Rybarczyk, Sierra, Semler, Matthew R, Huffman, Christopher, Mejia, Andres, Simmons, Heather A, Fritsch, Michael, Osorio, Jorge E, Eickhoff, Jens C, O'Connor, Shelby L, Ebel, Gregory D, Friedrich, Thomas C, Aliota, Matthew T

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Shedding of infectious SARS-CoV-2 despite vaccination von Riemersma, Kasen K, Haddock, 3rd, Luis A, Wilson, Nancy A, Minor, Nicholas, Eickhoff, Jens, Grogan, Brittany E, Kita-Yarbro, Amanda, Halfmann, Peter J, Segaloff, Hannah E, Kocharian, Anna, Florek, Kelsey R, Westergaard, Ryan, Bateman, Allen, Jeppson, Gunnar E, Kawaoka, Yoshihiro, O'Connor, David H, Friedrich, Thomas C, Grande, Katarina M

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Influenza A virus undergoes compartmentalized replication in vivo dominated by stochastic bottlenecks von Amato, Katherine A., Haddock, Luis A., Braun, Katarina M., Meliopoulos, Victoria, Livingston, Brandi, Honce, Rebekah, Schaack, Grace A., Boehm, Emma, Higgins, Christina A., Barry, Gabrielle L., Koelle, Katia, Schultz-Cherry, Stacey, Friedrich, Thomas C., Mehle, Andrew

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Selective Bottlenecks Shape Evolutionary Pathways Taken during Mammalian Adaptation of a 1918-like Avian Influenza Virus von Moncla, Louise H., Zhong, Gongxun, Nelson, Chase W., Dinis, Jorge M., Mutschler, James, Hughes, Austin L., Watanabe, Tokiko, Kawaoka, Yoshihiro, Friedrich, Thomas C.

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In Vitro Efficacy of Antiviral Agents against Omicron Subvariant BA.4.6 von Takashita, Emi, Yamayoshi, Seiya, Halfmann, Peter, Wilson, Nancy, Ries, Hunter, Richardson, Alex, Bobholz, Max, Vuyk, William, Maddox, Robert, Baker, David A., Friedrich, Thomas C., O’Connor, David H., Uraki, Ryuta, Ito, Mutsumi, Sakai-Tagawa, Yuko, Adachi, Eisuke, Saito, Makoto, Koga, Michiko, Tsutsumi, Takeya, Iwatsuki-Horimoto, Kiyoko, Kiso, Maki, Yotsuyanagi, Hiroshi, Watanabe, Shinji, Hasegawa, Hideki, Imai, Masaki, Kawaoka, Yoshihiro

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Deep Sequencing Reveals Potential Antigenic Variants at Low Frequencies in Influenza A Virus-Infected Humans von Dinis, Jorge M, Florek, Kelsey R, Fatola, Omolayo O, Moncla, Louise H, Mutschler, James P, Charlier, Olivia K, Meece, Jennifer K, Belongia, Edward A, Friedrich, Thomas C

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Identification of mammalian-adapting mutations in the polymerase complex of an avian H5N1 influenza virus von Taft, Andrew S., Ozawa, Makoto, Fitch, Adam, Depasse, Jay V., Halfmann, Peter J., Hill-Batorski, Lindsay, Hatta, Masato, Friedrich, Thomas C., Lopes, Tiago J. S., Maher, Eileen A., Ghedin, Elodie, Macken, Catherine A., Neumann, Gabriele, Kawaoka, Yoshihiro

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Using Virus Sequencing to Determine Source of SARS-CoV-2 Transmission for Healthcare Worker von Safdar, Nasia, Moreno, Gage K, Braun, Katarina M, Friedrich, Thomas C, O'Connor, David H

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Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread von Moreno, Gage K., Braun, Katarina M., Riemersma, Kasen K., Martin, Michael A., Halfmann, Peter J., Crooks, Chelsea M., Prall, Trent, Baker, David, Baczenas, John J., Heffron, Anna S., Ramuta, Mitchell, Khubbar, Manjeet, Weiler, Andrea M., Accola, Molly A., Rehrauer, William M., O’Connor, Shelby L., Safdar, Nasia, Pepperell, Caitlin S., Dasu, Trivikram, Bhattacharyya, Sanjib, Kawaoka, Yoshihiro, Koelle, Katia, O’Connor, David H., Friedrich, Thomas C.

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Infection via mosquito bite alters Zika virus tissue tropism and replication kinetics in rhesus macaques von Dudley, Dawn M., Newman, Christina M., Lalli, Joseph, Stewart, Laurel M., Koenig, Michelle R., Weiler, Andrea M., Semler, Matthew R., Barry, Gabrielle L., Zarbock, Katie R., Mohns, Mariel S., Breitbach, Meghan E., Schultz-Darken, Nancy, Peterson, Eric, Newton, Wendy, Mohr, Emma L., Capuano III, Saverio, Osorio, Jorge E., O’Connor, Shelby L., O’Connor, David H., Friedrich, Thomas C., Aliota, Matthew T.

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A Single Mutation in the VP1 of Enterovirus 71 Is Responsible for Increased Virulence and Neurotropism in Adult Interferon-Deficient Mice von Caine, Elizabeth A, Moncla, Louise H, Ronderos, Monica D, Friedrich, Thomas C, Osorio, Jorge E

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