miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades von Friedländer, Marc R., Mackowiak, Sebastian D., Li, Na, Chen, Wei, Rajewsky, Nikolaus

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MirGeneDB 2.1: toward a complete sampling of all major animal phyla von Fromm, Bastian, Høye, Eirik, Domanska, Diana, Zhong, Xiangfu, Aparicio-Puerta, Ernesto, Ovchinnikov, Vladimir, Umu, Sinan U, Chabot, Peter J, Kang, Wenjing, Aslanzadeh, Morteza, Tarbier, Marcel, Mármol-Sánchez, Emilio, Urgese, Gianvito, Johansen, Morten, Hovig, Eivind, Hackenberg, Michael, Friedländer, Marc R, Peterson, Kevin J

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MirGeneDB 2.0: the metazoan microRNA complement von Fromm, Bastian, Domanska, Diana, Høye, Eirik, Ovchinnikov, Vladimir, Kang, Wenjing, Aparicio-Puerta, Ernesto, Johansen, Morten, Flatmark, Kjersti, Mathelier, Anthony, Hovig, Eivind, Hackenberg, Michael, Friedländer, Marc R, Peterson, Kevin J

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EXOSC10 is required for RPA assembly and controlled DNA end resection at DNA double-strand breaks von Domingo-Prim, Judit, Endara-Coll, Martin, Bonath, Franziska, Jimeno, Sonia, Prados-Carvajal, Rosario, Friedländer, Marc R., Huertas, Pablo, Visa, Neus

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miRTrace reveals the organismal origins of microRNA sequencing data von Kang, Wenjing, Eldfjell, Yrin, Fromm, Bastian, Estivill, Xavier, Biryukova, Inna, Friedländer, Marc R

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Next-generation sequencing reveals two populations of damage-induced small RNAs at endogenous DNA double-strand breaks von Bonath, Franziska, Domingo-Prim, Judit, Tarbier, Marcel, Friedländer, Marc R, Visa, Neus

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Evolution of microRNAs in Amoebozoa and implications for the origin of multicellularity von Edelbroek, Bart, Kjellin, Jonas, Biryukova, Inna, Liao, Zhen, Lundberg, Torgny, Noegel, Angelika A, Eichinger, Ludwig, Friedländer, Marc R, Söderbom, Fredrik

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Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1 von Masser, Anna E, Kang, Wenjing, Roy, Joydeep, Mohanakrishnan Kaimal, Jayasankar, Quintana-Cordero, Jany, Friedländer, Marc R, Andréasson, Claes

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A combined approach for single-cell mRNA and intracellular protein expression analysis von Reimegård, Johan, Tarbier, Marcel, Danielsson, Marcus, Schuster, Jens, Baskaran, Sathishkumar, Panagiotou, Styliani, Dahl, Niklas, Friedländer, Marc R., Gallant, Caroline J.

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MapToCleave: High-throughput profiling of microRNA biogenesis in living cells von Kang, Wenjing, Fromm, Bastian, Houben, Anna J., Høye, Eirik, Bezdan, Daniela, Arnan, Carme, Thrane, Kim, Asp, Michaela, Johnson, Rory, Biryukova, Inna, Friedländer, Marc R.

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Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development von Malkani, Sherina, Chin, Christopher R., Cekanaviciute, Egle, Mortreux, Marie, Okinula, Hazeem, Tarbier, Marcel, Schreurs, Ann-Sofie, Shirazi-Fard, Yasaman, Tahimic, Candice G.T., Rodriguez, Deyra N., Sexton, Brittany S., Butler, Daniel, Verma, Akanksha, Bezdan, Daniela, Durmaz, Ceyda, MacKay, Matthew, Melnick, Ari, Meydan, Cem, Li, Sheng, Garrett-Bakelman, Francine, Fromm, Bastian, Afshinnekoo, Ebrahim, Langhorst, Brad W., Dimalanta, Eileen T., Cheng-Campbell, Margareth, Blaber, Elizabeth, Schisler, Jonathan C., Vanderburg, Charles, Friedländer, Marc R., McDonald, J. Tyson, Costes, Sylvain V., Rutkove, Seward, Grabham, Peter, Mason, Christopher E., Beheshti, Afshin

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Detection of transcriptome-wide microRNA–target interactions in single cells with agoTRIBE von Sekar, Vaishnovi, Mármol-Sánchez, Emilio, Kalogeropoulos, Panagiotis, Stanicek, Laura, Sagredo, Eduardo A., Widmark, Albin, Doukoumopoulos, Evangelos, Bonath, Franziska, Biryukova, Inna, Friedländer, Marc R.

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Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells von Tarbier, Marcel, Mackowiak, Sebastian D., Frade, João, Catuara-Solarz, Silvina, Biryukova, Inna, Gelali, Eleni, Menéndez, Diego Bárcena, Zapata, Luis, Ossowski, Stephan, Bienko, Magda, Gallant, Caroline J., Friedländer, Marc R.

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Cytosolic splice isoform of Hsp70 nucleotide exchange factor Fes1 is required for the degradation of misfolded proteins in yeast von Gowda, Naveen Kumar Chandappa, Kaimal, Jayasankar Mohanakrishnan, Masser, Anna E, Kang, Wenjing, Friedländer, Marc R, Andréasson, Claes

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Historical RNA expression profiles from the extinct Tasmanian tiger von Mármol-Sánchez, Emilio, Fromm, Bastian, Oskolkov, Nikolay, Pochon, Zoé, Kalogeropoulos, Panagiotis, Eriksson, Eli, Biryukova, Inna, Sekar, Vaishnovi, Ersmark, Erik, Andersson, Björn, Dalén, Love, Friedländer, Marc R

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Malat1 affects transcription and splicing through distinct pathways in mouse embryonic stem cells von Aslanzadeh, Morteza, Stanicek, Laura, Tarbier, Marcel, Mármol-Sánchez, Emilio, Biryukova, Inna, Friedländer, Marc R

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microRNA-205-5p is a modulator of insulin sensitivity that inhibits FOXO function von Langlet, Fanny, Tarbier, Marcel, Haeusler, Rebecca A., Camastra, Stefania, Ferrannini, Eleuterio, Friedländer, Marc R., Accili, Domenico

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Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories von 't Hoen, Peter A C, Friedländer, Marc R, Almlöf, Jonas, Sammeth, Michael, Pulyakhina, Irina, Anvar, Seyed Yahya, Laros, Jeroen F J, Buermans, Henk P J, Karlberg, Olof, Brännvall, Mathias, den Dunnen, Johan T, van Ommen, Gert-Jan B, Gut, Ivo G, Guigó, Roderic, Estivill, Xavier, Syvänen, Ann-Christine, Dermitzakis, Emmanouil T, Lappalainen, Tuuli

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Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API von Desvignes, Thomas, Loher, Phillipe, Eilbeck, Karen, Ma, Jeffery, Urgese, Gianvito, Fromm, Bastian, Sydes, Jason, Aparicio-Puerta, Ernesto, Barrera, Victor, Espín, Roderic, Thibord, Florian, Bofill-De Ros, Xavier, Londin, Eric, Telonis, Aristeidis G, Ficarra, Elisa, Friedländer, Marc R, Postlethwait, John H, Rigoutsos, Isidore, Hackenberg, Michael, Vlachos, Ioannis S, Halushka, Marc K, Pantano, Lorena

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MirGeneDB 3.0: improved taxonomic sampling, uniform nomenclature of novel conserved microRNA families and updated covariance models von Clarke, Alexander W, Høye, Eirik, Hembrom, Anju Angelina, Paynter, Vanessa Molin, Vinther, Jakob, Wyrożemski, Łukasz, Biryukova, Inna, Formaggioni, Alessandro, Ovchinnikov, Vladimir, Herlyn, Holger, Pierce, Alexandra, Wu, Charles, Aslanzadeh, Morteza, Cheneby, Jeanne, Martinez, Pedro, Friedländer, Marc R, Hovig, Eivind, Hackenberg, Michael, Umu, Sinan Uğur, Johansen, Morten, Peterson, Kevin J, Fromm, Bastian

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