Multiple Imputation Approaches Applied to the Missing Value Problem in Bottom-Up Proteomics von Gardner, Miranda L, Freitas, Michael A

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MassMatrix: A database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data von Xu, Hua, Freitas, Michael A

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Integrative Multi-Omics Analysis of Oncogenic EZH2 Mutants: From Epigenetic Reprogramming to Molecular Signatures von Aldana, Julian, Gardner, Miranda L, Freitas, Michael A

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A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data von Xu, Hua, Freitas, Michael A

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Epigenetic regulation of nuclear lamina-associated heterochromatin by HAT1 and the acetylation of newly synthesized histones von Popova, Liudmila V, Nagarajan, Prabakaran, Lovejoy, Callie M, Sunkel, Benjamin D, Gardner, Miranda L, Wang, Meng, Freitas, Michael A, Stanton, Benjamin Z, Parthun, Mark R

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Proteomic analysis of the umbilical cord in fetal growth restriction and preeclampsia von Conrad, Matthew S, Gardner, Miranda L, Miguel, Christine, Freitas, Michael A, Rood, Kara M, Ma'ayeh, Marwan

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Age‐related changes in mesenchymal stem cells derived from rhesus macaque bone marrow von Yu, Ji Min, Wu, Xiying, Gimble, Jeffrey M., Guan, Xiaoyan, Freitas, Michael A., Bunnell, Bruce A.

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Tetraspanin CD37 Directly Mediates Transduction of Survival and Apoptotic Signals von Lapalombella, Rosa, Yeh, Yuh-Ying, Wang, Liwen, Ramanunni, Asha, Rafiq, Sarwish, Jha, Shruti, Staubli, Justin, Lucas, David M., Mani, Rajeswaran, Herman, Sarah E.M., Johnson, Amy J., Lozanski, Arletta, Andritsos, Leslie, Jones, Jeffrey, Flynn, Joseph M., Lannutti, Brian, Thompson, Peter, Algate, Paul, Stromatt, Scott, Jarjoura, David, Mo, Xiaokui, Wang, Dasheng, Chen, Ching-Shih, Lozanski, Gerard, Heerema, Nyla A., Tridandapani, Susheela, Freitas, Michael A., Muthusamy, Natarajan, Byrd, John C.

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In vivo NCL targeting affects breast cancer aggressiveness through miRNA regulation von Pichiorri, Flavia, Palmieri, Dario, De Luca, Luciana, Consiglio, Jessica, You, Jia, Rocci, Alberto, Talabere, Tiffany, Piovan, Claudia, Lagana, Alessandro, Cascione, Luciano, Guan, Jingwen, Gasparini, Pierluigi, Balatti, Veronica, Nuovo, Gerard, Coppola, Vincenzo, Hofmeister, Craig C, Marcucci, Guido, Byrd, John C, Volinia, Stefano, Shapiro, Charles L, Freitas, Michael A, Croce, Carlo M

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Proteomic analysis reveals new cardiac-specific dystrophin-associated proteins von Johnson, Eric K, Zhang, Liwen, Adams, Marvin E, Phillips, Alistair, Freitas, Michael A, Froehner, Stanley C, Green-Church, Kari B, Montanaro, Federica

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Identification of multiple roles for histone acetyltransferase 1 in replication-coupled chromatin assembly von Agudelo Garcia, Paula A, Hoover, Michael E, Zhang, Pei, Nagarajan, Prabakaran, Freitas, Michael A, Parthun, Mark R

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Histone H3-K56 Acetylation Is Catalyzed by Histone Chaperone-Dependent Complexes von Tsubota, Toshiaki, Berndsen, Christopher E., Erkmann, Judith A., Smith, Corey L., Yang, Lanhao, Freitas, Michael A., Denu, John M., Kaufman, Paul D.

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Proteomic Signatures of Thymomas von Wang, Linan, Branson, Owen E, Shilo, Konstantin, Hitchcock, Charles L, Freitas, Michael A

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Proteomic characterization of circulating extracellular vesicles identifies novel serum myeloma associated markers von Harshman, Sean W., Canella, Alessandro, Ciarlariello, Paul D., Agarwal, Kitty, Branson, Owen E., Rocci, Alberto, Cordero, Hector, Phelps, Mitch A., Hade, Erinn M., Dubovsky, Jason A., Palumbo, Antonio, Rosko, Ashley, Byrd, John C., Hofmeister, Craig C., Benson, Don M., Paulaitis, Michael E., Freitas, Michael A., Pichiorri, Flavia

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Database Search Algorithm for Identification of Intact Cross-Links in Proteins and Peptides Using Tandem Mass Spectrometry von Xu, Hua, Hsu, Pang-Hung, Zhang, Liwen, Tsai, Ming-Daw, Freitas, Michael A

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A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time von Xu, Hua, Yang, Lanhao, Freitas, Michael A

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The early transition to cold-induced browning in mouse subcutaneous white adipose tissue (scWAT) involves proteins related to nerve remodeling, cytoskeleton, mitochondria, and immu... von Blaszkiewicz, Magdalena, Johnson, Cory P., Willows, Jake W., Gardner, Miranda L., Taplin, Dylan R., Freitas, Michael A., Townsend, Kristy L.

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A dynamic noise level algorithm for spectral screening of peptide MS/MS spectra von Xu, Hua, Freitas, Michael A

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Sites of Acetylation on Newly Synthesized Histone H4 Are Required for Chromatin Assembly and DNA Damage Response Signaling von Ge, Zhongqi, Nair, Devi, Guan, Xiaoyan, Rastogi, Neha, Freitas, Michael A., Parthun, Mark R.

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H1 histones: current perspectives and challenges von Harshman, Sean W, Young, Nicolas L, Parthun, Mark R, Freitas, Michael A

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