Field-deployable viral diagnostics using CRISPR-Cas13 von Myhrvold, Cameron, Freije, Catherine A, Gootenberg, Jonathan S, Abudayyeh, Omar O, Metsky, Hayden C, Durbin, Ann F, Kellner, Max J, Tan, Amanda L, Paul, Lauren M, Parham, Leda A, Garcia, Kimberly F, Barnes, Kayla G, Chak, Bridget, Mondini, Adriano, Nogueira, Mauricio L, Isern, Sharon, Michael, Scott F, Lorenzana, Ivette, Yozwiak, Nathan L, MacInnis, Bronwyn L, Bosch, Irene, Gehrke, Lee, Zhang, Feng, Sabeti, Pardis C

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Transcriptomic characterization of fibrolamellar hepatocellular carcinoma von Simon, Elana P., Freije, Catherine A., Farber, Benjamin A., Lalazar, Gadi, Darcy, David G., Honeyman, Joshua N., Chiaroni-Clarke, Rachel, Dill, Brian D., Molina, Henrik, Bhanot, Umesh K., La Quaglia, Michael P., Rosenberg, Brad R., Simon, Sanford M.

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Longitudinal transcriptomic characterization of the immune response to acute hepatitis C virus infection in patients with spontaneous viral clearance von Rosenberg, Brad R, Depla, Marion, Freije, Catherine A, Gaucher, Denis, Mazouz, Sabrina, Boisvert, Maude, Bédard, Nathalie, Bruneau, Julie, Rice, Charles M, Shoukry, Naglaa H

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Detect and destroy: CRISPR-based technologies for the response against viruses von Freije, Catherine A., Sabeti, Pardis C.

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Programmable Inhibition and Detection of RNA Viruses Using Cas13 von Freije, Catherine A., Myhrvold, Cameron, Boehm, Chloe K., Lin, Aaron E., Welch, Nicole L., Carter, Amber, Metsky, Hayden C., Luo, Cynthia Y., Abudayyeh, Omar O., Gootenberg, Jonathan S., Yozwiak, Nathan L., Zhang, Feng, Sabeti, Pardis C.

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Nucleic acid detection with CRISPR-Cas13a/C2c2 von Gootenberg, Jonathan S., Abudayyeh, Omar O., Lee, Jeong Wook, Essletzbichler, Patrick, Dy, Aaron J., Joung, Julia, Verdine, Vanessa, Donghia, Nina, Daringer, Nichole M., Freije, Catherine A., Myhrvold, Cameron, Bhattacharyya, Roby P., Livny, Jonathan, Regev, Aviv, Koonin, Eugene V., Hung, Deborah T., Sabeti, Pardis C., Collins, James J., Zhang, Feng

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Massively multiplexed nucleic acid detection with Cas13 von Ackerman, Cheri M., Myhrvold, Cameron, Thakku, Sri Gowtham, Freije, Catherine A., Metsky, Hayden C., Yang, David K., Ye, Simon H., Boehm, Chloe K., Kosoko-Thoroddsen, Tinna-Sólveig F., Kehe, Jared, Nguyen, Tien G., Carter, Amber, Kulesa, Anthony, Barnes, John R., Dugan, Vivien G., Hung, Deborah T., Blainey, Paul C., Sabeti, Pardis C.

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Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2 von Arizti-Sanz, Jon, Freije, Catherine A., Stanton, Alexandra C., Petros, Brittany A., Boehm, Chloe K., Siddiqui, Sameed, Shaw, Bennett M., Adams, Gordon, Kosoko-Thoroddsen, Tinna-Solveig F., Kemball, Molly E., Uwanibe, Jessica N., Ajogbasile, Fehintola V., Eromon, Philomena E., Gross, Robin, Wronka, Loni, Caviness, Katie, Hensley, Lisa E., Bergman, Nicholas H., MacInnis, Bronwyn L., Happi, Christian T., Lemieux, Jacob E., Sabeti, Pardis C., Myhrvold, Cameron

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Zika virus evolution and spread in the Americas von Metsky, Hayden C., Matranga, Christian B., Wohl, Shirlee, Schaffner, Stephen F., Freije, Catherine A., Winnicki, Sarah M., West, Kendra, Qu, James, Baniecki, Mary Lynn, Gladden-Young, Adrianne, Lin, Aaron E., Tomkins-Tinch, Christopher H., Ye, Simon H., Park, Daniel J., Luo, Cynthia Y., Barnes, Kayla G., Shah, Rickey R., Chak, Bridget, Barbosa-Lima, Giselle, Delatorre, Edson, Vieira, Yasmine R., Paul, Lauren M., Tan, Amanda L., Barcellona, Carolyn M., Porcelli, Mario C., Vasquez, Chalmers, Cannons, Andrew C., Cone, Marshall R., Hogan, Kelly N., Kopp, Edgar W., Anzinger, Joshua J., Garcia, Kimberly F., Parham, Leda A., Ramírez, Rosa M. Gélvez, Montoya, Maria C. Miranda, Rojas, Diana P., Brown, Catherine M., Hennigan, Scott, Sabina, Brandon, Scotland, Sarah, Gangavarapu, Karthik, Grubaugh, Nathan D., Oliveira, Glenn, Robles-Sikisaka, Refugio, Rambaut, Andrew, Gehrke, Lee, Smole, Sandra, Halloran, M. Elizabeth, Villar, Luis, Mattar, Salim, Lorenzana, Ivette, Cerbino-Neto, Jose, Valim, Clarissa, Degrave, Wim, Bozza, Patricia T., Gnirke, Andreas, Andersen, Kristian G., Isern, Sharon, Michael, Scott F., Bozza, Fernando A., Souza, Thiago M. L., Bosch, Irene, Yozwiak, Nathan L., MacInnis, Bronwyn L., Sabeti, Pardis C.

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Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time von Barnes, Kayla G., Lachenauer, Anna E., Nitido, Adam, Siddiqui, Sameed, Gross, Robin, Beitzel, Brett, Siddle, Katherine J., Freije, Catherine A., Dighero-Kemp, Bonnie, Mehta, Samar B., Carter, Amber, Uwanibe, Jessica, Ajogbasile, Fehintola, Olumade, Testimony, Odia, Ikponmwosa, Sandi, John Demby, Momoh, Mambu, Metsky, Hayden C., Boehm, Chloe K., Lin, Aaron E., Kemball, Molly, Park, Daniel J., Branco, Luis, Boisen, Matt, Sullivan, Brian, Amare, Mihret F., Tiamiyu, Abdulwasiu B., Parker, Zahra F., Iroezindu, Michael, Grant, Donald S., Modjarrad, Kayvon, Myhrvold, Cameron, Garry, Robert F., Palacios, Gustavo, Hensley, Lisa E., Schaffner, Stephen F., Happi, Christian T., Colubri, Andres, Sabeti, Pardis C.

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Genomic epidemiology reveals multiple introductions of Zika virus into the United States von Grubaugh, Nathan D., Ladner, Jason T., Kraemer, Moritz U. G., Dudas, Gytis, Tan, Amanda L., Gangavarapu, Karthik, Wiley, Michael R., White, Stephen, Thézé, Julien, Magnani, Diogo M., Prieto, Karla, Reyes, Daniel, Bingham, Andrea M., Paul, Lauren M., Robles-Sikisaka, Refugio, Oliveira, Glenn, Pronty, Darryl, Barcellona, Carolyn M., Metsky, Hayden C., Baniecki, Mary Lynn, Barnes, Kayla G., Chak, Bridget, Freije, Catherine A., Gladden-Young, Adrianne, Gnirke, Andreas, Luo, Cynthia, MacInnis, Bronwyn, Matranga, Christian B., Park, Daniel J., Qu, James, Schaffner, Stephen F., Tomkins-Tinch, Christopher, West, Kendra L., Winnicki, Sarah M., Wohl, Shirlee, Yozwiak, Nathan L., Quick, Joshua, Fauver, Joseph R., Khan, Kamran, Brent, Shannon E., Reiner, Robert C., Lichtenberger, Paola N., Ricciardi, Michael J., Bailey, Varian K., Watkins, David I., Cone, Marshall R., Kopp, Edgar W., Hogan, Kelly N., Cannons, Andrew C., Jean, Reynald, Monaghan, Andrew J., Garry, Robert F., Loman, Nicholas J., Faria, Nuno R., Porcelli, Mario C., Vasquez, Chalmers, Nagle, Elyse R., Cummings, Derek A. T., Stanek, Danielle, Rambaut, Andrew, Sanchez-Lockhart, Mariano, Sabeti, Pardis C., Gillis, Leah D., Michael, Scott F., Bedford, Trevor, Pybus, Oliver G., Isern, Sharon, Palacios, Gustavo, Andersen, Kristian G.

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Deep mutational scanning of hepatitis B virus reveals a mechanism for cis-preferential reverse transcription von Yu, Yingpu, Kass, Maximilian A., Zhang, Mengyin, Youssef, Noor, Freije, Catherine A., Brock, Kelly P., Aguado, Lauren C., Seifert, Leon L., Venkittu, Sanjana, Hong, Xupeng, Shlomai, Amir, de Jong, Ype P., Marks, Debora S., Rice, Charles M., Schneider, William M.

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Simplified Cas13-based assays for the fast identification of SARS-CoV-2 and its variants von Arizti-Sanz, Jon, Bradley, A’Doriann, Zhang, Yibin B., Boehm, Chloe K., Freije, Catherine A., Grunberg, Michelle E., Kosoko-Thoroddsen, Tinna-Solveig F., Welch, Nicole L., Pillai, Priya P., Mantena, Sreekar, Kim, Gaeun, Uwanibe, Jessica N., John, Oluwagboadurami G., Eromon, Philomena E., Kocher, Gregory, Gross, Robin, Lee, Justin S., Hensley, Lisa E., MacInnis, Bronwyn L., Johnson, Jeremy, Springer, Michael, Happi, Christian T., Sabeti, Pardis C., Myhrvold, Cameron

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Genetic Variation at IFNL4 Influences Extrahepatic Interferon-Stimulated Gene Expression in Chronic HCV Patients von Rosenberg, Brad R, Freije, Catherine A, Imanaka, Naoko, Chen, Spencer T, Eitson, Jennifer L, Caron, Rachel, Uhl, Skyler A, Zeremski, Marija, Talal, Andrew, Jacobson, Ira M, Rice, Charles M, Schoggins, John W

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Metagenomic Sequencing of HIV-1 in the Blood and Female Genital Tract Reveals Little Quasispecies Diversity during Acute Infection von Piantadosi, Anne, Freije, Catherine A, Gosmann, Christina, Ye, Simon, Park, Daniel, Schaffner, Stephen F, Tully, Damien C, Allen, Todd M, Dong, Krista L, Sabeti, Pardis C, Kwon, Douglas S

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Powassan Virus Neuropathology and Genomic Diversity in Patients With Fatal Encephalitis von Normandin, Erica, Solomon, Isaac H, Zamirpour, Siavash, Lemieux, Jacob, Freije, Catherine A, Mukerji, Shibani S, Tomkins-Tinch, Christopher, Park, Daniel, Sabeti, Pardis C, Piantadosi, Anne

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An RNA-based system to study hepatitis B virus replication and evaluate antivirals von Yu, Yingpu, Schneider, William M, Kass, Maximilian A, Michailidis, Eleftherios, Acevedo, Ashley, Pamplona Mosimann, Ana L, Bordignon, Juliano, Koenig, Alexander, Livingston, Christine M, van Gijzel, Hardeep, Ni, Yi, Ambrose, Pradeep M, Freije, Catherine A, Zhang, Mengyin, Zou, Chenhui, Kabbani, Mohammad, Quirk, Corrine, Jahan, Cyprien, Wu, Xianfang, Urban, Stephan, You, Shihyun, Shlomai, Amir, de Jong, Ype P, Rice, Charles M

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Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018 von Siddle, Katherine J, Eromon, Philomena, Barnes, Kayla G, Mehta, Samar, Oguzie, Judith U, Odia, Ikponmwosa, Schaffner, Stephen F, Winnicki, Sarah M, Shah, Rickey R, Qu, James, Wohl, Shirlee, Brehio, Patrick, Iruolagbe, Christopher, Aiyepada, John, Uyigue, Eghosa, Akhilomen, Patience, Okonofua, Grace, Ye, Simon, Kayode, Tolulope, Ajogbasile, Fehintola, Uwanibe, Jessica, Gaye, Amy, Momoh, Mambu, Chak, Bridget, Kotliar, Dylan, Carter, Amber, Gladden-Young, Adrianne, Freije, Catherine A, Omoregie, Omigie, Osiemi, Blessing, Muoebonam, Ekene B, Airende, Michael, Enigbe, Rachael, Ebo, Benevolence, Nosamiefan, Iguosadolo, Oluniyi, Paul, Nekoui, Mahan, Ogbaini-Emovon, Ephraim, Garry, Robert F, Andersen, Kristian G, Park, Daniel J, Yozwiak, Nathan L, Akpede, George, Ihekweazu, Chikwe, Tomori, Oyewale, Okogbenin, Sylvanus, Folarin, Onikepe A, Okokhere, Peter O, MacInnis, Bronwyn L, Sabeti, Pardis C, Happi, Christian T

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Inborn Errors of RNA Lariat Metabolism in Humans with Brainstem Viral Infection von Zhang, Shen-Ying, Clark, Nathaniel E., Freije, Catherine A., Pauwels, Elodie, Taggart, Allison J., Okada, Satoshi, Mandel, Hanna, Garcia, Paula, Ciancanelli, Michael J., Biran, Anat, Lafaille, Fabien G., Tsumura, Miyuki, Cobat, Aurélie, Luo, Jingchuan, Volpi, Stefano, Zimmer, Bastian, Sakata, Sonoko, Dinis, Alexandra, Ohara, Osamu, Garcia Reino, Eduardo J., Dobbs, Kerry, Hasek, Mary, Holloway, Stephen P., McCammon, Karen, Hussong, Stacy A., DeRosa, Nicholas, Van Skike, Candice E., Katolik, Adam, Lorenzo, Lazaro, Hyodo, Maki, Faria, Emilia, Halwani, Rabih, Fukuhara, Rie, Smith, Gregory A., Galvan, Veronica, Damha, Masad J., Al-Muhsen, Saleh, Itan, Yuval, Boeke, Jef D., Notarangelo, Luigi D., Studer, Lorenz, Kobayashi, Masao, Diogo, Luisa, Fairbrother, William G., Abel, Laurent, Rosenberg, Brad R., Hart, P. John, Etzioni, Amos, Casanova, Jean-Laurent

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A genome-wide arrayed CRISPR screen identifies PLSCR1 as an intrinsic barrier to SARS-CoV-2 entry that recent virus variants have evolved to resist von Le Pen, Jérémie, Paniccia, Gabrielle, Kinast, Volker, Moncada-Velez, Marcela, Ashbrook, Alison W, Bauer, Michael, Hoffmann, H-Heinrich, Pinharanda, Ana, Ricardo-Lax, Inna, Stenzel, Ansgar F, Rosado-Olivieri, Edwin A, Dinnon, 3rd, Kenneth H, Doyle, William C, Freije, Catherine A, Hong, Seon-Hui, Lee, Danyel, Lewy, Tyler, Luna, Joseph M, Peace, Avery, Schmidt, Carltin, Schneider, William M, Winkler, Roni, Yip, Elaine Z, Larson, Chloe, McGinn, Timothy, Menezes, Miriam-Rose, Ramos-Espiritu, Lavoisier, Banerjee, Priyam, Poirier, John T, Sànchez-Rivera, Francisco J, Cobat, Aurélie, Zhang, Qian, Casanova, Jean-Laurent, Carroll, Thomas S, Glickman, J Fraser, Michailidis, Eleftherios, Razooky, Brandon, MacDonald, Margaret R, Rice, Charles M

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