Animal domestication in the era of ancient genomics von Frantz, Laurent A. F., Bradley, Daniel G., Larson, Greger, Orlando, Ludovic

Volltext

Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes von Frantz, Laurent A F, Schraiber, Joshua G, Madsen, Ole, Megens, Hendrik-Jan, Cagan, Alex, Bosse, Mirte, Paudel, Yogesh, Crooijmans, Richard P M A, Larson, Greger, Groenen, Martien A M

Volltext

Regions of homozygosity in the porcine genome: consequence of demography and the recombination landscape von Bosse, Mirte, Megens, Hendrik-Jan, Madsen, Ole, Paudel, Yogesh, Frantz, Laurent A F, Schook, Lawrence B, Crooijmans, Richard P M A, Groenen, Martien A M

Volltext

Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage von Velsko, Irina M, Fellows Yates, James A, Aron, Franziska, Hagan, Richard W, Frantz, Laurent A F, Loe, Louise, Martinez, Juan Bautista Rodriguez, Chaves, Eros, Gosden, Chris, Larson, Greger, Warinner, Christina

Volltext

Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion von Liu, Langqing, Bosse, Mirte, Megens, Hendrik-Jan, Frantz, Laurent A. F., Lee, Young-Lim, Irving-Pease, Evan K., Narayan, Goutam, Groenen, Martien A. M., Madsen, Ole

Volltext

Local and systemic insulin resistance resulting from hepatic activation of IKK-β and NF-κB von Shoelson, Steven E, Cai, Dongsheng, Yuan, Minsheng, Frantz, Daniel F, Melendez, Peter A, Hansen, Lone, Lee, Jongsoon

Volltext

HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data von Dimopoulos, Evangelos A, Carmagnini, Alberto, Velsko, Irina M, Warinner, Christina, Larson, Greger, Frantz, Laurent A. F, Irving-Pease, Evan K

Volltext

Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression von Bosse, Mirte, Megens, Hendrik-Jan, Frantz, Laurent A. F., Madsen, Ole, Larson, Greger, Paudel, Yogesh, Duijvesteijn, Naomi, Harlizius, Barbara, Hagemeijer, Yanick, Crooijmans, Richard P. M. A., Groenen, Martien A. M.

Volltext

Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication von Paudel, Yogesh, Madsen, Ole, Megens, Hendrik-Jan, Frantz, Laurent A F, Bosse, Mirte, Bastiaansen, John W M, Crooijmans, Richard P M A, Groenen, Martien A M

Volltext

ABLE: blockwise site frequency spectra for inferring complex population histories and recombination von Beeravolu, Champak R, Hickerson, Michael J, Frantz, Laurent A F, Lohse, Konrad

Volltext

Addendum: Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion von Liu, Langqing, Bosse, Mirte, Megens, Hendrik-Jan, Frantz, Laurent A. F., Lee, Young-Lim, Irving-Pease, Evan K., Narayan, Goutam, Groenen, Martien A. M., Madsen, Ole

Volltext

A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants von Rice, Edward S, Alberdi, Antton, Alfieri, James, Athrey, Giridhar, Balacco, Jennifer R, Bardou, Philippe, Blackmon, Heath, Charles, Mathieu, Cheng, Hans H, Fedrigo, Olivier, Fiddaman, Steven R, Formenti, Giulio, Frantz, Laurent A F, Gilbert, M Thomas P, Hearn, Cari J, Jarvis, Erich D, Klopp, Christophe, Marcos, Sofia, Mason, Andrew S, Velez-Irizarry, Deborah, Xu, Luohao, Warren, Wesley C

Volltext

Testing models of speciation from genome sequences: divergence and asymmetric admixture in Island South-East Asian Sus species during the Plio-Pleistocene climatic fluctuations von Frantz, Laurent A. F., Madsen, Ole, Megens, Hendrik-Jan, Groenen, Martien A. M., Lohse, Konrad

Volltext

Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research von Velsko, Irina M, Frantz, Laurent A F, Herbig, Alexander, Larson, Greger, Warinner, Christina

Volltext

Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations von Bosse, Mirte, Megens, Hendrik‐Jan, Madsen, Ole, Frantz, Laurent A. F, Paudel, Yogesh, Crooijmans, Richard P. M. A, Groenen, Martien A. M

Volltext

Genomic insights into the population history and adaptive traits of Latin American Criollo cattle von Ward, James A, Ng'ang'a, Said I, Randhawa, Imtiaz A S, McHugo, Gillian P, O'Grady, John F, Flórez, Julio M, Browne, John A, Pérez O'Brien, Ana M, Landaeta-Hernández, Antonio J, Garcia, Jóse F, Sonstegard, Tad S, Frantz, Laurent A F, Salter-Townshend, Michael, MacHugh, David E

Volltext

Genomes reveal selective sweeps in kiang and donkey for high-altitude adaptation von Zeng, Lin, Liu, He-Qun, Tu, Xiao-Long, Ji, Chang-Mian, Gou, Xiao, Esmailizadeh, Ali, Wang, Sheng, Wang, Ming-Shan, Wang, Ming-Cheng, Li, Xiao-Long, Charati, Hadi, Adeola, Adeniyi C, Adedokun, Rahamon Akinyele Moshood, Oladipo, Olatunbosun, Olaogun, Sunday Charles, Sanke, Oscar J, Godwin, F Mangbon, Ommeh, Sheila Cecily, Agwanda, Bernard, Lichoti, Jacqueline Kasiiti, Han, Jian-Lin, Zheng, Hong-Kun, Wang, Chang-Fa, Zhang, Ya-Ping, Frantz, Laurent A F, Wu, Dong-Dong

Volltext

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus von Frantz, Laurent A F, Schraiber, Joshua G, Madsen, Ole, Megens, Hendrik-Jan, Bosse, Mirte, Paudel, Yogesh, Semiadi, Gono, Meijaard, Erik, Li, Ning, Crooijmans, Richard P M A, Archibald, Alan L, Slatkin, Montgomery, Schook, Lawrence B, Larson, Greger, Groenen, Martien A M

Volltext

Control of experimental pulmonary tuberculosis depends more on immunostimulatory leukotrienes than on the absence of immunosuppressive prostaglandins von Peres-Buzalaf, C, de Paula, L, Frantz, F.G, Soares, E.M, Medeiros, A.I, Peters-Golden, M, Silva, C.L, Faccioli, L.H

Volltext

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture von Meadows, Jennifer R S, Kidd, Jeffrey M, Wang, Guo-Dong, Parker, Heidi G, Schall, Peter Z, Bianchi, Matteo, Christmas, Matthew J, Bougiouri, Katia, Buckley, Reuben M, Hitte, Christophe, Nguyen, Anthony K, Wang, Chao, Jagannathan, Vidhya, Niskanen, Julia E, Frantz, Laurent A F, Arumilli, Meharji, Hundi, Sruthi, Lindblad-Toh, Kerstin, Ginja, Catarina, Agustina, Kadek Karang, André, Catherine, Boyko, Adam R, Davis, Brian W, Drögemüller, Michaela, Feng, Xin-Yao, Gkagkavouzis, Konstantinos, Iliopoulos, Giorgos, Harris, Alexander C, Hytönen, Marjo K, Kalthoff, Daniela C, Liu, Yan-Hu, Lymberakis, Petros, Poulakakis, Nikolaos, Pires, Ana Elisabete, Racimo, Fernando, Ramos-Almodovar, Fabian, Savolainen, Peter, Venetsani, Semina, Tammen, Imke, Triantafyllidis, Alexandros, vonHoldt, Bridgett, Wayne, Robert K, Larson, Greger, Nicholas, Frank W, Lohi, Hannes, Leeb, Tosso, Zhang, Ya-Ping, Ostrander, Elaine A

Volltext