Araport11: a complete reannotation of the Arabidopsis thaliana reference genome von Cheng, Chia‐Yi, Krishnakumar, Vivek, Chan, Agnes P., Thibaud‐Nissen, Françoise, Schobel, Seth, Town, Christopher D.

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Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity von Low, Wai Yee, Tearle, Rick, Bickhart, Derek M., Rosen, Benjamin D., Kingan, Sarah B., Swale, Thomas, Thibaud-Nissen, Françoise, Murphy, Terence D., Young, Rachel, Lefevre, Lucas, Hume, David A., Collins, Andrew, Ajmone-Marsan, Paolo, Smith, Timothy P. L., Williams, John L.

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A joint NCBI and EMBL-EBI transcript set for clinical genomics and research von Morales, Joannella, Pujar, Shashikant, Loveland, Jane E., Astashyn, Alex, Bennett, Ruth, Berry, Andrew, Cox, Eric, Davidson, Claire, Ermolaeva, Olga, Farrell, Catherine M., Fatima, Reham, Gil, Laurent, Goldfarb, Tamara, Gonzalez, Jose M., Haddad, Diana, Hardy, Matthew, Hunt, Toby, Jackson, John, Joardar, Vinita S., Kay, Michael, Kodali, Vamsi K., McGarvey, Kelly M., McMahon, Aoife, Mudge, Jonathan M., Murphy, Daniel N., Murphy, Michael R., Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Thibaud-Nissen, Françoise, Threadgold, Glen, Vatsan, Anjana R., Wallin, Craig, Webb, David, Flicek, Paul, Birney, Ewan, Pruitt, Kim D., Frankish, Adam, Cunningham, Fiona, Murphy, Terence D.

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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly von Schneider, Valerie A, Graves-Lindsay, Tina, Howe, Kerstin, Bouk, Nathan, Chen, Hsiu-Chuan, Kitts, Paul A, Murphy, Terence D, Pruitt, Kim D, Thibaud-Nissen, Françoise, Albracht, Derek, Fulton, Robert S, Kremitzki, Milinn, Magrini, Vincent, Markovic, Chris, McGrath, Sean, Steinberg, Karyn Meltz, Auger, Kate, Chow, William, Collins, Joanna, Harden, Glenn, Hubbard, Timothy, Pelan, Sarah, Simpson, Jared T, Threadgold, Glen, Torrance, James, Wood, Jonathan M, Clarke, Laura, Koren, Sergey, Boitano, Matthew, Peluso, Paul, Li, Heng, Chin, Chen-Shan, Phillippy, Adam M, Durbin, Richard, Wilson, Richard K, Flicek, Paul, Eichler, Evan E, Church, Deanna M

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Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle von Low, Wai Yee, Tearle, Rick, Liu, Ruijie, Koren, Sergey, Rhie, Arang, Bickhart, Derek M., Rosen, Benjamin D., Kronenberg, Zev N., Kingan, Sarah B., Tseng, Elizabeth, Thibaud-Nissen, Françoise, Martin, Fergal J., Billis, Konstantinos, Ghurye, Jay, Hastie, Alex R., Lee, Joyce, Pang, Andy W. C., Heaton, Michael P., Phillippy, Adam M., Hiendleder, Stefan, Smith, Timothy P. L., Williams, John L.

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Improved reference genome of the arboviral vector Aedes albopictus von Palatini, Umberto, Masri, Reem A, Cosme, Luciano V, Koren, Sergey, Thibaud-Nissen, Françoise, Biedler, James K, Krsticevic, Flavia, Johnston, J Spencer, Halbach, Rebecca, Crawford, Jacob E, Antoshechkin, Igor, Failloux, Anna-Bella, Pischedda, Elisa, Marconcini, Michele, Ghurye, Jay, Rhie, Arang, Sharma, Atashi, Karagodin, Dmitry A, Jenrette, Jeremy, Gamez, Stephanie, Miesen, Pascal, Masterson, Patrick, Caccone, Adalgisa, Sharakhova, Maria V, Tu, Zhijian, Papathanos, Philippos A, Van Rij, Ronald P, Akbari, Omar S, Powell, Jeffrey, Phillippy, Adam M, Bonizzoni, Mariangela

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Evolutionary and Expression Signatures of Pseudogenes in Arabidopsis and Rice von Zou, Cheng, Lehti-Shiu, Melissa D, Thibaud-Nissen, Françoise, Prakash, Tanmay, Buell, C. Robin, Shiu, Shin-Han

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Clustering of microarray data reveals transcript patterns associated with somatic embryogenesis in soybean von Thibaud-Nissen, F, Shealy, R.T, Khanna, A, Vodkin, L.O

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Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates von Kong, Wenqian, Liu, Min, Felker, Peter, Ewens, Mauricio, Bessega, Cecilia, Pometti, Carolina, Wang, Jinpeng, Xu, Peng, Teng, Jia, Wang, Jinyu, Wang, Xiyin, Jiao, Yuannian, Alabady, Magdy S., Thibaud‐Nissen, Françoise, Masterson, Patrick, Qiao, Xin, Paterson, Andrew H.

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RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation von Li, Wenjun, O’Neill, Kathleen R, Haft, Daniel H, DiCuccio, Michael, Chetvernin, Vyacheslav, Badretdin, Azat, Coulouris, George, Chitsaz, Farideh, Derbyshire, Myra K, Durkin, A Scott, Gonzales, Noreen R, Gwadz, Marc, Lanczycki, Christopher J, Song, James S, Thanki, Narmada, Wang, Jiyao, Yamashita, Roxanne A, Yang, Mingzhang, Zheng, Chanjuan, Marchler-Bauer, Aron, Thibaud-Nissen, Françoise

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RefSeq: an update on prokaryotic genome annotation and curation von Haft, Daniel H, DiCuccio, Michael, Badretdin, Azat, Brover, Vyacheslav, Chetvernin, Vyacheslav, O'Neill, Kathleen, Li, Wenjun, Chitsaz, Farideh, Derbyshire, Myra K, Gonzales, Noreen R, Gwadz, Marc, Lu, Fu, Marchler, Gabriele H, Song, James S, Thanki, Narmada, Yamashita, Roxanne A, Zheng, Chanjuan, Thibaud-Nissen, Françoise, Geer, Lewis Y, Marchler-Bauer, Aron, Pruitt, Kim D

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Telomere-to-telomere assembly of a complete human X chromosome von Miga, Karen H., Koren, Sergey, Rhie, Arang, Vollger, Mitchell R., Gershman, Ariel, Bzikadze, Andrey, Brooks, Shelise, Howe, Edmund, Porubsky, David, Logsdon, Glennis A., Schneider, Valerie A., Potapova, Tamara, Wood, Jonathan, Chow, William, Armstrong, Joel, Fredrickson, Jeanne, Pak, Evgenia, Tigyi, Kristof, Kremitzki, Milinn, Markovic, Christopher, Maduro, Valerie, Dutra, Amalia, Bouffard, Gerard G., Chang, Alexander M., Hansen, Nancy F., Wilfert, Amy B., Thibaud-Nissen, Françoise, Schmitt, Anthony D., Belton, Jon-Matthew, Selvaraj, Siddarth, Dennis, Megan Y., Soto, Daniela C., Sahasrabudhe, Ruta, Kaya, Gulhan, Quick, Josh, Loman, Nicholas J., Holmes, Nadine, Loose, Matthew, Surti, Urvashi, Risques, Rosa ana, Graves Lindsay, Tina A., Fulton, Robert, Hall, Ira, Paten, Benedict, Howe, Kerstin, Timp, Winston, Young, Alice, Mullikin, James C., Pevzner, Pavel A., Gerton, Jennifer L., Sullivan, Beth A., Eichler, Evan E., Phillippy, Adam M.

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Database resources of the National Center for Biotechnology Information von Sayers, Eric W, Beck, Jeff, Brister, J Rodney, Bolton, Evan E, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Ketter, Anne, Kim, Sunghwan, Kimchi, Avi, Kitts, Paul A, Kuznetsov, Anatoliy, Lathrop, Stacy, Lu, Zhiyong, McGarvey, Kelly, Madden, Thomas L, Murphy, Terence D, O’Leary, Nuala, Phan, Lon, Schneider, Valerie A, Thibaud-Nissen, Françoise, Trawick, Bart W, Pruitt, Kim D, Ostell, James

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Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean von Lee, Young Ho, Abueg, Linelle, Kim, Jin-Koo, Kim, Young Wook, Fedrigo, Olivier, Balacco, Jennifer, Formenti, Giulio, Howe, Kerstin, Tracey, Alan, Wood, Jonathan, Thibaud-Nissen, Françoise, Nam, Bo Hye, No, Eun Soo, Kim, Hye Ran, Lee, Chul, Jarvis, Erich D., Kim, Heebal

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Identification and characterization of pseudogenes in the rice gene complement von Thibaud-Nissen, Françoise, Ouyang, Shu, Buell, C Robin

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Development of Arabidopsis whole‐genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid‐treated plants von Thibaud‐Nissen, Françoise, Wu, Hank, Richmond, Todd, Redman, Julia C., Johnson, Christopher, Green, Roland, Arias, Jonathan, Town, Christopher D.

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Assembly: a resource for assembled genomes at NCBI von Kitts, Paul A, Church, Deanna M, Thibaud-Nissen, Françoise, Choi, Jinna, Hem, Vichet, Sapojnikov, Victor, Smith, Robert G, Tatusova, Tatiana, Xiang, Charlie, Zherikov, Andrey, DiCuccio, Michael, Murphy, Terence D, Pruitt, Kim D, Kimchi, Avi

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The Egyptian Rousette Genome Reveals Unexpected Features of Bat Antiviral Immunity von Pavlovich, Stephanie S., Lovett, Sean P., Koroleva, Galina, Guito, Jonathan C., Arnold, Catherine E., Nagle, Elyse R., Kulcsar, Kirsten, Lee, Albert, Thibaud-Nissen, Françoise, Hume, Adam J., Mühlberger, Elke, Uebelhoer, Luke S., Towner, Jonathan S., Rabadan, Raul, Sanchez-Lockhart, Mariano, Kepler, Thomas B., Palacios, Gustavo

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Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation von Formenti, Giulio, Rhie, Arang, Walenz, Brian P., Thibaud-Nissen, Françoise, Shafin, Kishwar, Koren, Sergey, Myers, Eugene W., Jarvis, Erich D., Phillippy, Adam M.

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RefSeq: an update on mammalian reference sequences von Pruitt, Kim D, Brown, Garth R, Hiatt, Susan M, Thibaud-Nissen, Françoise, Astashyn, Alexander, Ermolaeva, Olga, Farrell, Catherine M, Hart, Jennifer, Landrum, Melissa J, McGarvey, Kelly M, Murphy, Michael R, O'Leary, Nuala A, Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Shkeda, Andrei, Sun, Hanzhen, Tamez, Pamela, Tully, Raymond E, Wallin, Craig, Webb, David, Weber, Janet, Wu, Wendy, DiCuccio, Michael, Kitts, Paul, Maglott, Donna R, Murphy, Terence D, Ostell, James M

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