Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer von Heidegger, Isabel, Fotakis, Georgios, Offermann, Anne, Goveia, Jermaine, Daum, Sophia, Salcher, Stefan, Noureen, Asma, Timmer-Bosscha, Hetty, Schäfer, Georg, Walenkamp, Annemiek, Perner, Sven, Beatovic, Aleksandar, Moisse, Matthieu, Plattner, Christina, Krogsdam, Anne, Haybaeck, Johannes, Sopper, Sieghart, Thaler, Stefanie, Keller, Markus A, Klocker, Helmut, Trajanoski, Zlatko, Wolf, Dominik, Pircher, Andreas

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Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity von Binenbaum, Ilona, Atamni, Hanifa Abu-Toamih, Fotakis, Georgios, Kontogianni, Georgia, Koutsandreas, Theodoros, Pilalis, Eleftherios, Mott, Richard, Himmelbauer, Heinz, Iraqi, Fuad A, Chatziioannou, Aristotelis A

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Comparative analysis of 10X Chromium vs. BD Rhapsody whole transcriptome single-cell sequencing technologies in complex human tissues von Salcher, Stefan, Heidegger, Isabel, Untergasser, Gerold, Fotakis, Georgios, Scheiber, Alexandra, Martowicz, Agnieszka, Noureen, Asma, Krogsdam, Anne, Schatz, Christoph, Schäfer, Georg, Trajanoski, Zlatko, Wolf, Dominik, Sopper, Sieghart, Pircher, Andreas

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Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data von Sturm, Gregor, Szabo, Tamas, Fotakis, Georgios, Haider, Marlene, Rieder, Dietmar, Trajanoski, Zlatko, Finotello, Francesca

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NeoFuse: predicting fusion neoantigens from RNA sequencing data von Fotakis, Georgios, Rieder, Dietmar, Haider, Marlene, Trajanoski, Zlatko, Finotello, Francesca

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nextNEOpi: a comprehensive pipeline for computational neoantigen prediction von Rieder, Dietmar, Fotakis, Georgios, Ausserhofer, Markus, René, Geyeregger, Paster, Wolfgang, Trajanoski, Zlatko, Finotello, Francesca

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High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer von Salcher, Stefan, Sturm, Gregor, Horvath, Lena, Untergasser, Gerold, Kuempers, Christiane, Fotakis, Georgios, Panizzolo, Elisa, Martowicz, Agnieszka, Trebo, Manuel, Pall, Georg, Gamerith, Gabriele, Sykora, Martina, Augustin, Florian, Schmitz, Katja, Finotello, Francesca, Rieder, Dietmar, Perner, Sven, Sopper, Sieghart, Wolf, Dominik, Pircher, Andreas, Trajanoski, Zlatko

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Glucocorticoid treatment influences prostate cancer cell growth and the tumor microenvironment via altered glucocorticoid receptor signaling in prostate fibroblasts von Eigentler, Andrea, Handle, Florian, Schanung, Silvia, Degen, Antonia, Hackl, Hubert, Erb, Holger H. H., Fotakis, Georgios, Hoefer, Julia, Ploner, Christian, Jöhrer, Karin, Heidegger, Isabel, Pircher, Andreas, Klotz, Werner, Herold, Manfred, Schäfer, Georg, Culig, Zoran, Puhr, Martin

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A novel calcium channel Cavβ2 splice variant with unique properties predominates in the retina von Seitter, Hartwig, Obkircher, Jana, Grabher, Patricia, Hartl, Julia, Zanetti, Lucia, Lux, Uwe Thorsten, Fotakis, Georgios, Fernández-Quintero, Monica L., Kaserer, Teresa, Koschak, Alexandra

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Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity von Binenbaum, Ilona, Atamni, Hanifa Abu-Toamih, Fotakis, Georgios, Kontogianni, Georgia, Koutsandreas, Theodoros, Pilalis, Eleftherios, Mott, Richard, Himmelbauer, Heinz, Iraqi, Fuad A, Chatziioannou, Aristotelis A

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A novel calcium channel Cavβ 2 splice variant with unique properties predominates in the retina von Seitter, Hartwig, Obkircher, Jana, Grabher, Patricia, Hartl, Julia, Zanetti, Lucia, Lux, Uwe Thorsten, Fotakis, Georgios, Fernández-Quintero, Monica L, Kaserer, Teresa, Koschak, Alexandra

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Abstract 4013: Functional heterogeneity of cancer-associated stromal subtypes in the prostate cancer microenvironment von Damisch, Elisabeth, Brunner, Elena, Sopper, Sieghart, Heidegger, Isabel, Pircher, Andreas, Fotakis, Georgios, Trajanoski, Zlatko, Deichsler, Sandra Theresa, Schäfer, Georg, Sampson, Natalie

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Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer von Plattner, Christina, Lamberti, Giorgia, Blattmann, Peter, Kirchmair, Alexander, Rieder, Dietmar, Loncova, Zuzana, Sturm, Gregor, Scheidl, Stefan, Ijsselsteijn, Marieke, Fotakis, Georgios, Noureen, Asma, Lisandrelli, Rebecca, Böck, Nina, Nemati, Niloofar, Krogsdam, Anne, Daum, Sophia, Finotello, Francesca, Somarakis, Antonios, Schäfer, Alexander, Wilflingseder, Doris, Gonzalez Acera, Miguel, Öfner, Dietmar, Huber, Lukas A., Clevers, Hans, Becker, Christoph, Farin, Henner F., Greten, Florian R., Aebersold, Ruedi, de Miranda, Noel F.C.C., Trajanoski, Zlatko

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Conventional therapy induces tumor immunoediting and modulates the immune contexture in colorectal cancer von Fotakis, Georgios, Rieder, Dietmar, Loncova, Zuzana, Carollo, Sandro, Klieser, Eckhard, Daniel, Neureiter, Huemer, Florian, Hoegler, Sandra, Tomberger, Martina, Krogsdam, Anne, Kenner, Lukas, Ziegler, Paul K., Greil, Richard, Weiss, Lukas, Trajanoski, Zlatko

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Comparative Analysis of Droplet- vs. Microwell-based Whole Transcriptome Single-Cell Sequencing Technologies in Complex Human Tissues von Salcher, Stefan, Heidegger, Isabel, Untergasser, Gerold, Fotakis, Georgios, Scheiber, Alexandra, Martowicz, Agnieszka, Noureen, Asma, Krogsdam, Anne, Schatz, Christoph, Schäfer, Georg, Trajanoski, Zlatko, Wolf, Dominik, Sopper, Sieghart, Pircher, Andreas

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Additional file 5 of Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity von Binenbaum, Ilona, Atamni, Hanifa Abu-Toamih, Fotakis, Georgios, Kontogianni, Georgia, Koutsandreas, Theodoros, Pilalis, Eleftherios, Mott, Richard, Himmelbauer, Heinz, Iraqi, Fuad A., Chatziioannou, Aristotelis A.

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Additional file 2 of Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity von Binenbaum, Ilona, Atamni, Hanifa Abu-Toamih, Fotakis, Georgios, Kontogianni, Georgia, Koutsandreas, Theodoros, Pilalis, Eleftherios, Mott, Richard, Himmelbauer, Heinz, Iraqi, Fuad A., Chatziioannou, Aristotelis A.

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Additional file 3 of Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity von Binenbaum, Ilona, Atamni, Hanifa Abu-Toamih, Fotakis, Georgios, Kontogianni, Georgia, Koutsandreas, Theodoros, Pilalis, Eleftherios, Mott, Richard, Himmelbauer, Heinz, Iraqi, Fuad A., Chatziioannou, Aristotelis A.

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Additional file 4 of Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity von Binenbaum, Ilona, Atamni, Hanifa Abu-Toamih, Fotakis, Georgios, Kontogianni, Georgia, Koutsandreas, Theodoros, Pilalis, Eleftherios, Mott, Richard, Himmelbauer, Heinz, Iraqi, Fuad A., Chatziioannou, Aristotelis A.

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Additional file 6 of Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity von Binenbaum, Ilona, Atamni, Hanifa Abu-Toamih, Fotakis, Georgios, Kontogianni, Georgia, Koutsandreas, Theodoros, Pilalis, Eleftherios, Mott, Richard, Himmelbauer, Heinz, Iraqi, Fuad A., Chatziioannou, Aristotelis A.

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