A core human microbiome as viewed through 16S rRNA sequence clusters von Huse, Susan M, Ye, Yuzhen, Zhou, Yanjiao, Fodor, Anthony A

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Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories von Sun, Shan, Jones, Roshonda B., Fodor, Anthony A.

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Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium von Sinha, Rashmi, Abu-Ali, Galeb, Vogtmann, Emily, Fodor, Anthony A, Ren, Boyu, Amir, Amnon, Schwager, Emma, Crabtree, Jonathan, Ma, Siyuan, Abnet, Christian C, Knight, Rob, White, Owen, Huttenhower, Curtis

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The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations von Fodor, Anthony A, Klem, Erich R, Gilpin, Deirdre F, Elborn, J Stuart, Boucher, Richard C, Tunney, Michael M, Wolfgang, Matthew C

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Compositional Data Analysis of the Microbiome: Fundamentals, Tools, and Challenges von Tsilimigras, Matthew C.B, Fodor, Anthony A

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Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer von Arthur, Janelle C., Gharaibeh, Raad Z., Mühlbauer, Marcus, Perez-Chanona, Ernesto, Uronis, Joshua M., McCafferty, Jonathan, Fodor, Anthony A., Jobin, Christian

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Locoregional Effects of Microbiota in a Preclinical Model of Colon Carcinogenesis von Tomkovich, Sarah, Yang, Ye, Winglee, Kathryn, Gauthier, Josee, Mühlbauer, Marcus, Sun, Xiaolun, Mohamadzadeh, Mansour, Liu, Xiuli, Martin, Patricia, Wang, Gary P, Oswald, Eric, Fodor, Anthony A, Jobin, Christian

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Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota von Arthur, Janelle C., Perez-Chanona, Ernesto, Mühlbauer, Marcus, Tomkovich, Sarah, Uronis, Joshua M., Fan, Ting-Jia, Campbell, Barry J., Abujamel, Turki, Dogan, Belgin, Rogers, Arlin B., Rhodes, Jonathan M., Stintzi, Alain, Simpson, Kenneth W., Hansen, Jonathan J., Keku, Temitope O., Fodor, Anthony A., Jobin, Christian

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Human colon mucosal biofilms from healthy or colon cancer hosts are carcinogenic von Tomkovich, Sarah, Dejea, Christine M, Winglee, Kathryn, Drewes, Julia L, Chung, Liam, Housseau, Franck, Pope, Jillian L, Gauthier, Josee, Sun, Xiaolun, Mühlbauer, Marcus, Liu, Xiuli, Fathi, Payam, Anders, Robert A, Besharati, Sepideh, Perez-Chanona, Ernesto, Yang, Ye, Ding, Hua, Wu, Xinqun, Wu, Shaoguang, White, James R, Gharaibeh, Raad Z, Fodor, Anthony A, Wang, Hao, Pardoll, Drew M, Jobin, Christian, Sears, Cynthia L

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Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing von Fouladi, Farnaz, Bailey, Maximilian J., Patterson, William B., Sioda, Michael, Blakley, Ivory C., Fodor, Anthony A., Jones, Roshonda B., Chen, Zhanghua, Kim, Jeniffer S., Lurmann, Frederick, Martino, Cameron, Knight, Rob, Gilliland, Frank D., Alderete, Tanya L.

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Gut Microbiota Composition and Blood Pressure: The CARDIA Study von Sun, Shan, Lulla, Anju, Sioda, Michael, Winglee, Kathryn, Wu, Michael C, Jacobs, David R, Shikany, James M, Lloyd-Jones, Donald M, Launer, Lenore J, Fodor, Anthony A, Meyer, Katie A

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Reporting guidelines for human microbiome research: the STORMS checklist von Mirzayi, Chloe, Renson, Audrey, Zohra, Fatima, Elsafoury, Shaimaa, Geistlinger, Ludwig, Kasselman, Lora J., Eckenrode, Kelly, van de Wijgert, Janneke, Loughman, Amy, Marques, Francine Z., MacIntyre, David A., Arumugam, Manimozhiyan, Azhar, Rimsha, Beghini, Francesco, Bergstrom, Kirk, Bhatt, Ami, Bisanz, Jordan E., Braun, Jonathan, Bravo, Hector Corrada, Buck, Gregory A., Bushman, Frederic, Casero, David, Clarke, Gerard, Collado, Maria Carmen, Cotter, Paul D., Cryan, John F., Demmer, Ryan T., Devkota, Suzanne, Elinav, Eran, Escobar, Juan S., Fettweis, Jennifer, Finn, Robert D., Fodor, Anthony A., Forslund, Sofia, Franke, Andre, Furlanello, Cesare, Gilbert, Jack, Grice, Elizabeth, Haibe-Kains, Benjamin, Handley, Scott, Herd, Pamela, Holmes, Susan, Jacobs, Jonathan P., Karstens, Lisa, Knight, Rob, Knights, Dan, Koren, Omry, Kwon, Douglas S., Langille, Morgan, Lindsay, Brianna, McGovern, Dermot, McHardy, Alice C., McWeeney, Shannon, Mueller, Noel T., Nezi, Luigi, Olm, Matthew, Palm, Noah, Pasolli, Edoardo, Raes, Jeroen, Redinbo, Matthew R., Rühlemann, Malte, Balfour Sartor, R., Schloss, Patrick D., Schriml, Lynn, Segal, Eran, Shardell, Michelle, Smirnova, Ekaterina, Sokol, Harry, Sonnenburg, Justin L., Srinivasan, Sujatha, Thingholm, Louise B., Turnbaugh, Peter J., Upadhyay, Vaibhav, Walls, Ramona L., Wilmes, Paul, Yamada, Takuji, Zeller, Georg, Zhang, Mingyu, Zhao, Ni, Zhao, Liping, Bao, Wenjun, Culhane, Aedin, Devanarayan, Viswanath, Dopazo, Joaquin, Fan, Xiaohui, Fischer, Matthias, Kusko, Rebecca, Mason, Christopher E., Mercer, Tim R., Sansone, Susanna-Assunta, Scherer, Andreas, Shi, Leming, Thakkar, Shraddha, Tong, Weida, Wolfinger, Russ, Hunter, Christopher, Segata, Nicola, Dowd, Jennifer B., Jones, Heidi E., Waldron, Levi

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Batch effects removal for microbiome data via conditional quantile regression von Ling, Wodan, Lu, Jiuyao, Zhao, Ni, Lulla, Anju, Plantinga, Anna M., Fu, Weijia, Zhang, Angela, Liu, Hongjiao, Song, Hoseung, Li, Zhigang, Chen, Jun, Randolph, Timothy W., Koay, Wei Li A., White, James R., Launer, Lenore J., Fodor, Anthony A., Meyer, Katie A., Wu, Michael C.

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Association Between Composition of the Human Gastrointestinal Microbiome and Development of Fatty Liver With Choline Deficiency von Spencer, Melanie D, Hamp, Timothy J, Reid, Robert W, Fischer, Leslie M, Zeisel, Steven H, Fodor, Anthony A

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Intestinal microbiota enhances pancreatic carcinogenesis in preclinical models von Thomas, Ryan M, Gharaibeh, Raad Z, Gauthier, Josee, Beveridge, Mark, Pope, Jillian L, Guijarro, Maria V, Yu, Qin, He, Zhen, Ohland, Christina, Newsome, Rachel, Trevino, Jose, Hughes, Steven J, Reinhard, Mary, Winglee, Kathryn, Fodor, Anthony A, Zajac-Kaye, Maria, Jobin, Christian

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Early-Life Sugar Consumption Affects the Rat Microbiome Independently of Obesity von Noble, Emily E, Hsu, Ted M, Jones, Roshonda B, Fodor, Anthony A, Goran, Michael I, Kanoski, Scott E

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The Gut-Brain Axis in Healthy Females: Lack of Significant Association between Microbial Composition and Diversity with Psychiatric Measures von Kleiman, Susan C, Bulik-Sullivan, Emily C, Glenny, Elaine M, Zerwas, Stephanie C, Huh, Eun Young, Tsilimigras, Matthew C B, Fodor, Anthony A, Bulik, Cynthia M, Carroll, Ian M

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The "most wanted" taxa from the human microbiome for whole genome sequencing von Fodor, Anthony A, DeSantis, Todd Z, Wylie, Kristine M, Badger, Jonathan H, Ye, Yuzhen, Hepburn, Theresa, Hu, Ping, Sodergren, Erica, Liolios, Konstantinos, Huot-Creasy, Heather, Birren, Bruce W, Earl, Ashlee M

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Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model von McCafferty, Jonathan, Mühlbauer, Marcus, Gharaibeh, Raad Z, Arthur, Janelle C, Perez-Chanona, Ernesto, Sha, Wei, Jobin, Christian, Fodor, Anthony A

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Proportion-based normalizations outperform compositional data transformations in machine learning applications von Yerke, Aaron, Fry Brumit, Daisy, Fodor, Anthony A

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