Human-Gut Phages Harbor Sporulation Genes von Schwartz, Daniel A, Rodríguez-Ramos, Josué A, Shaffer, Michael, Flynn, Rory M, Daly, Rebecca A, Wrighton, Kelly C, Lennon, Jay T

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Exposing new taxonomic variation with inflammation - a murine model-specific genome database for gut microbiome researchers von Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M, Daly, Rebecca A, Kop, Linnea F M, Solden, Lindsey M, Ahmer, Brian M M, Borton, Mikayla A, Wrighton, Kelly C

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Gut microbiota carbon and sulfur metabolisms support Salmonella infections von Leleiwi, Ikaia, Kokkinias, Katherine, Kim, Yongseok, Baniasad, Maryam, Shaffer, Michael, Sabag-Daigle, Anice, Daly, Rebecca A, Flynn, Rory M, Wysocki, Vicki H, Ahmer, Brian M M, Borton, Mikayla A, Wrighton, Kelly C

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kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase von Shaffer, Michael, Borton, Mikayla A, Bolduc, Ben, Faria, José P, Flynn, Rory M, Ghadermazi, Parsa, Edirisinghe, Janaka N, Wood-Charlson, Elisha M, Miller, Christopher S, Chan, Siu Hung Joshua, Sullivan, Matthew B, Henry, Christopher S, Wrighton, Kelly C

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Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle von McGivern, Bridget B., Cronin, Dylan R., Ellenbogen, Jared B., Borton, Mikayla A., Knutson, Eleanor L., Freire-Zapata, Viviana, Bouranis, John A., Bernhardt, Lukas, Hernandez, Alma I., Flynn, Rory M., Woyda, Reed, Cory, Alexandra B., Wilson, Rachel M., Chanton, Jeffrey P., Woodcroft, Ben J., Ernakovich, Jessica G., Tfaily, Malak M., Sullivan, Matthew B., Tyson, Gene W., Rich, Virginia I., Hagerman, Ann E., Wrighton, Kelly C.

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Spatial and temporal metagenomics of river compartments reveals viral community dynamics in an urban impacted stream von Rodríguez-Ramos, Josué, Oliverio, Angela, Borton, Mikayla A., Danczak, Robert, Mueller, Birgit M., Schulz, Hanna, Ellenbogen, Jared, Flynn, Rory M., Daly, Rebecca A., Schopflin, LeAundra, Shaffer, Michael, Goldman, Amy, Lewandowski, Joerg, Stegen, James C., Wrighton, Kelly C.

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Additional file 5 of Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers von Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M., Daly, Rebecca A., Kop, Linnea F. M., Solden, Lindsey M., Ahmer, Brian M. M., Borton, Mikayla A., Wrighton, Kelly C.

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Additional file 7 of Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers von Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M., Daly, Rebecca A., Kop, Linnea F. M., Solden, Lindsey M., Ahmer, Brian M. M., Borton, Mikayla A., Wrighton, Kelly C.

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Additional file 2 of Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers von Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M., Daly, Rebecca A., Kop, Linnea F. M., Solden, Lindsey M., Ahmer, Brian M. M., Borton, Mikayla A., Wrighton, Kelly C.

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Additional file 3 of Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers von Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M., Daly, Rebecca A., Kop, Linnea F. M., Solden, Lindsey M., Ahmer, Brian M. M., Borton, Mikayla A., Wrighton, Kelly C.

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Additional file 1 of Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers von Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M., Daly, Rebecca A., Kop, Linnea F. M., Solden, Lindsey M., Ahmer, Brian M. M., Borton, Mikayla A., Wrighton, Kelly C.

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Additional file 6 of Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers von Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M., Daly, Rebecca A., Kop, Linnea F. M., Solden, Lindsey M., Ahmer, Brian M. M., Borton, Mikayla A., Wrighton, Kelly C.

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Additional file 4 of Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers von Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M., Daly, Rebecca A., Kop, Linnea F. M., Solden, Lindsey M., Ahmer, Brian M. M., Borton, Mikayla A., Wrighton, Kelly C.

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Exposing New Taxonomic Variation with Inflammation – A Model-Specific Genome Database for Microbiome Researchers von Leleiwi, Ikaia, Shaffer, Michael, Rodriguez-Ramos, Josue, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M, Daly, Rebecca A, Kopp, Linnea, Solden, Lindsey M, Ahmer, Brian, Borton, Mikayla A, Wrighton, Kelly C

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Study of restriction fragment length polymorphism analysis and spoligotyping for epidemiological investigation of Mycobacterium bovis infection von Costello, E, O'Grady, D, Flynn, O, O'Brien, R, Rogers, M, Quigley, F, Egan, J, Griffin, J

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Characterization of the Mycobacterium bovis Restriction Fragment Length Polymorphism DNA Probe pUCD and Performance Comparison with Standard Methods von O'BRIEN, R, DANILOWICZ, B. S, BAILEY, L, FLYNN, O, COSTELLO, E, O'GRADY, D, ROGERS, M

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Identification of a novel DNA probe for strain typing Mycobacterium bovis by restriction fragment length polymorphism analysis von O'Brien, R, Flynn, O, Costello, E, O'Grady, D, Rogers, M

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