Targeted capture and massively parallel sequencing of 12 human exomes von Ng, Sarah B, Shendure, Jay, Turner, Emily H, Robertson, Peggy D, Flygare, Steven D, Bigham, Abigail W, Lee, Choli, Shaffer, Tristan, Wong, Michelle, Bhattacharjee, Arindam, Eichler, Evan E, Bamshad, Michael, Nickerson, Deborah A

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Muscle stem cells contribute to myofibres in sedentary adult mice von Keefe, Alexandra C., Lawson, Jennifer A., Flygare, Steven D., Fox, Zachary D., Colasanto, Mary P., Mathew, Sam J., Yandell, Mark, Kardon, Gabrielle

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Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel von Graf, Erin H, Simmon, Keith E, Tardif, Keith D, Hymas, Weston, Flygare, Steven, Eilbeck, Karen, Yandell, Mark, Schlaberg, Robert

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Transiently Active Wnt/β-Catenin Signaling Is Not Required but Must Be Silenced for Stem Cell Function during Muscle Regeneration von Murphy, Malea M., Keefe, Alexandra C., Lawson, Jennifer A., Flygare, Steven D., Yandell, Mark, Kardon, Gabrielle

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Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling von Flygare, Steven, Simmon, Keith, Miller, Chase, Qiao, Yi, Kennedy, Brett, Di Sera, Tonya, Graf, Erin H, Tardif, Keith D, Kapusta, Aurélie, Rynearson, Shawn, Stockmann, Chris, Queen, Krista, Tong, Suxiang, Voelkerding, Karl V, Blaschke, Anne, Byington, Carrie L, Jain, Seema, Pavia, Andrew, Ampofo, Krow, Eilbeck, Karen, Marth, Gabor, Yandell, Mark, Schlaberg, Robert

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VAAST 2.0: Improved Variant Classification and Disease-Gene Identification Using a Conservation-Controlled Amino Acid Substitution Matrix von Hu, Hao, Huff, Chad D., Moore, Barry, Flygare, Steven, Reese, Martin G., Yandell, Mark

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The VAAST Variant Prioritizer (VVP): ultrafast, easy to use whole genome variant prioritization tool von Flygare, Steven, Hernandez, Edgar Javier, Phan, Lon, Moore, Barry, Li, Man, Fejes, Anthony, Hu, Hao, Eilbeck, Karen, Huff, Chad, Jorde, Lynn, G Reese, Martin, Yandell, Mark

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Viral Pathogen Detection by Metagenomics and Pan-Viral Group Polymerase Chain Reaction in Children With Pneumonia Lacking Identifiable Etiology von Schlaberg, Robert, Queen, Krista, Simmon, Keith, Tardif, Keith, Stockmann, Chris, Flygare, Steven, Kennedy, Brett, Voelkerding, Karl, Bramley, Anna, Zhang, Jing, Eilbeck, Karen, Yandell, Mark, Jain, Seema, Pavia, Andrew T., Tong, Suxiang, Ampofo, Krow

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Using machine learning and RNA-seq to increase the accuracy and decrease the invasiveness of diagnosing eosinophilic esophagitis von Lin, Edwin, Flygare, Steven, Peterson, Kathryn, Clayton, Frederic, Yandell, Mark

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Trasposon Mediated Horizontal Gene Transfer (T-HGT) of Circulating Tumor DNA Reshapes MM Clonal Architecture von Cinar, Munevver, Flygare, Steven, Mosunjac, Marina, Nagaraju, Ganji, Park, Dongkyoo, Faith, Sheff, Saxe, Debra, Bernal-Mizrachi, Leon

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Transposon DNA sequences facilitate the tissue-specific gene transfer of circulating tumor DNA between human cells von Cinar, Munevver, Martinez-Medina, Lourdes, Puvvula, Pavan K, Arakelyan, Arsen, Vardarajan, Badri N, Anthony, Neil, Nagaraju, Ganji P, Park, Dongkyoo, Feng, Lei, Sheff, Faith, Mosunjac, Marina, Saxe, Debra, Flygare, Steven, Alese, Olatunji B, Kaufman, Jonathan L, Lonial, Sagar, Sarmiento, Juan M, Lossos, Izidore S, Vertino, Paula M, Lopez, Jose A, El-Rayes, Bassel, Bernal-Mizrachi, Leon

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Human Bocavirus Capsid Messenger RNA Detection in Children With Pneumonia von Schlaberg, Robert, Ampofo, Krow, Tardif, Keith D., Stockmann, Chris, Simmon, Keith E., Hymas, Weston, Flygare, Steven, Kennedy, Brett, Blaschke, Anne, Eilbeck, Karen, Yandell, Mark, McCullers, Jon A., Williams, Derek J., Edwards, Kathryn, Arnold, Sandra R., Bramley, Anna, Jain, Seema, Pavia, Andrew T.

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ImagePlane: an automated image analysis pipeline for high-throughput screens using the planarian Schmidtea mediterranea von Flygare, Steven, Campbell, Michael, Ross, Robert Mars, Moore, Barry, Yandell, Mark

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Using VAAST to Identify Disease‐Associated Variants in Next‐Generation Sequencing Data von Kennedy, Brett, Kronenberg, Zev, Hu, Hao, Moore, Barry, Flygare, Steven, Reese, Martin G., Jorde, Lynn B., Yandell, Mark, Huff, Chad

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Muscle stem cells contribute to myofibers in sedentary adult mice von Keefe, Alexandra C., Lawson, Jennifer A., Flygare, Steven D., Fox, Zachary D., Colasanto, Mary P., Mathew, Sam J., Yandell, Mark, Kardon, Gabrielle

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Targeted Capture and Massively Parallel Sequencing of Twelve Human Exomes von Ng, Sarah B., Turner, Emily H., Robertson, Peggy D., Flygare, Steven D., Bigham, Abigail W., Lee, Choli, Shaffer, Tristan, Wong, Michelle, Bhattacharjee, Arindam, Eichler, Evan E., Bamshad, Michael, Nickerson, Deborah A., Shendure, Jay

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779Viral Pathogen Detection by Metagenomics and Panviral PCR in Children with Pneumonia with no Identifiable Etiology: Preliminary Results from the CDC Etiology of Pneumonia in the... von Schlaberg, Robert, Queen, Krista, Simmon, Keith, Tardif, Keith, Stockmann, Chris, Flygare, Steven, Kennedy, Brett, Voelkerding, Karl, Bramley, Anna M., Eilbeck, Karen, Yandell, Mark, Jain, Seema, Pavia, Andrew, Tong, Suxiang, Ampofo, Krow

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771Can Human Bocavirus mRNA Detection Differentiate Acute Infection from Viral Shedding? von Schlaberg, Robert, Ampofo, Krow, Tardif, Keith, Stockmann, Chris, Simmon, Keith, Hymas, Weston, Flygare, Steven, Kennedy, Brett, Blaschke, Anne J., Eilbeck, Karen, Yandell, Mark, Bramley, Anna M., Jain, Seema, Pavia, Andrew

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Methods and systems for multiple taxonomic classification von Marth, Gabor, Miller, Chase, Yandell, Mark, Schlaberg, Robert, Simmon, Keith, Qiao, Yi, Eilbeck, Karen, Flygare, Steven

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METHODS AND SYSTEMS FOR METAGENOMICS ANALYSIS von Li, Qing, Matsuzaki, Hajime, Xie, Wan, Liao, Guochun, Schlaberg, Robert, Xie, Heng, Flygare, Steven, Mei, Yuying

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