SCANellome V2: Update of the Primate Anellovirus Reference Sequences Database von Laubscher, Florian, Kaiser, Laurent, Cordey, Samuel

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SCANellome: Analysis of the Genomic Diversity of Human and Non-Human Primate Anelloviruses from Metagenomics Data von Laubscher, Florian, Kaiser, Laurent, Cordey, Samuel

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Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples von de Vries, Jutte J.C., Brown, Julianne R., Fischer, Nicole, Sidorov, Igor A., Morfopoulou, Sofia, Huang, Jiabin, Munnink, Bas B. Oude, Sayiner, Arzu, Bulgurcu, Alihan, Rodriguez, Christophe, Gricourt, Guillaume, Keyaerts, Els, Beller, Leen, Bachofen, Claudia, Kubacki, Jakub, Cordey, Samuel, Laubscher, Florian, Schmitz, Dennis, Beer, Martin, Hoeper, Dirk, Huber, Michael, Kufner, Verena, Zaheri, Maryam, Lebrand, Aitana, Papa, Anna, van Boheemen, Sander, Kroes, Aloys C.M., Breuer, Judith, Lopez-Labrador, F. Xavier, Claas, Eric C.J.

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Reconstruction of transmission chains of SARS-CoV-2 amidst multiple outbreaks in a geriatric acute-care hospital: a combined retrospective epidemiological and genomic study von Abbas, Mohamed, Cori, Anne, Cordey, Samuel, Laubscher, Florian, Robalo Nunes, Tomás, Myall, Ashleigh, Salamun, Julien, Huber, Philippe, Zekry, Dina, Prendki, Virginie, Iten, Anne, Vieux, Laure, Sauvan, Valérie, Graf, Christophe E, Harbarth, Stephan

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Genomic Diversity of Torque Teno Virus in Blood Samples from Febrile Paediatric Outpatients in Tanzania: A Descriptive Cohort Study von Laubscher, Florian, Hartley, Mary-Anne, Kaiser, Laurent, Cordey, Samuel

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Puumala Virus Infection in Family, Switzerland von Vetter, Pauline, L'Huillier, Arnaud G, Montalbano, Maria F, Pigny, Fiona, Eckerle, Isabella, Torriani, Giulia, Rothenberger, Sylvia, Laubscher, Florian, Cordey, Samuel, Kaiser, Laurent, Schibler, Manuel

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Direct Dengue Virus Genome Sequencing from Antigen NS1 Rapid Diagnostic Tests: A Proof-of-Concept with the Standard Q Dengue Duo Assay von Pérez-Rodríguez, Francisco-Javier, Laubscher, Florian, Chudzinski, Valentin, Kaiser, Laurent, Cordey, Samuel

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Epidemiological, virological and serological investigation of a SARS-CoV-2 outbreak (Alpha variant) in a primary school: A prospective longitudinal study von Lorthe, Elsa, Bellon, Mathilde, Michielin, Grégoire, Berthelot, Julie, Zaballa, María-Eugenia, Pennacchio, Francesco, Bekliz, Meriem, Laubscher, Florian, Arefi, Fatemeh, Perez-Saez, Javier, Azman, Andrew S, L'Huillier, Arnaud G, Posfay-Barbe, Klara M, Kaiser, Laurent, Guessous, Idris, Maerkl, Sebastian J, Eckerle, Isabella, Stringhini, Silvia

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Virosaurus A Reference to Explore and Capture Virus Genetic Diversity von Gleizes, Anne, Laubscher, Florian, Guex, Nicolas, Iseli, Christian, Junier, Thomas, Cordey, Samuel, Fellay, Jacques, Xenarios, Ioannis, Kaiser, Laurent, Mercier, Philippe Le

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Daily Viral Kinetics and Innate and Adaptive Immune Response Assessment in COVID-19: a Case Series von Vetter, Pauline, Eberhardt, Christiane S, Meyer, Benjamin, Martinez Murillo, Paola Andrea, Torriani, Giulia, Pigny, Fiona, Lemeille, Sylvain, Cordey, Samuel, Laubscher, Florian, Vu, Diem-Lan, Calame, Adrien, Schibler, Manuel, Jacquerioz, Frederique, Blanchard-Rohner, Géraldine, Siegrist, Claire-Anne, Kaiser, Laurent, Didierlaurent, Arnaud M, Eckerle, Isabella

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Occupational and community risk of SARS-CoV-2 infection among employees of a long-term care facility: an observational study von Lenggenhager, Lauriane, Martischang, Romain, Sauser, Julien, Perez, Monica, Vieux, Laure, Graf, Christophe, Cordey, Samuel, Laubscher, Florian, Nunes, Tomás Robalo, Zingg, Walter, Cori, Anne, Harbarth, Stephan, Abbas, Mohamed

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Blood virosphere in febrile Tanzanian children von Cordey, Samuel, Laubscher, Florian, Hartley, Mary-Anne, Junier, Thomas, Keitel, Kristina, Docquier, Mylène, Guex, Nicolas, Iseli, Christian, Vieille, Gael, Le Mercier, Philippe, Gleizes, Anne, Samaka, Josephine, Mlaganile, Tarsis, Kagoro, Frank, Masimba, John, Said, Zamzam, Temba, Hosiana, Elbanna, Gasser H., Tapparel, Caroline, Zanella, Marie-Celine, Xenarios, Ioannis, Fellay, Jacques, D'Acremont, Valérie, Kaiser, Laurent

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Unbiased metagenomic next-generation sequencing of blood from hospitalized febrile children in Gabon von Fernandes, José Francisco, Laubscher, Florian, Held, Jana, Eckerle, Isabella, Docquier, Mylène, Grobusch, Martin Peter, Mordmüller, Benjamin, Kaiser, Laurent, Cordey, Samuel

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SARS-CoV-2 Evolution among Oncological Population: In-Depth Virological Analysis of a Clinical Cohort von Laubscher, Florian, Cordey, Samuel, Friedlaender, Alex, Schweblin, Cecilia, Noetzlin, Sarah, Simand, Pierre-François, Bordry, Natacha, De Sousa, Filipe, Pigny, Fiona, Baggio, Stephanie, Getaz, Laurent, Dietrich, Pierre-Yves, Kaiser, Laurent, Vu, Diem-Lan

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Detection of dicistroviruses RNA in blood of febrile Tanzanian children von Cordey, Samuel, Laubscher, Florian, Hartley, Mary-Anne, Junier, Thomas, Pérez-Rodriguez, Francisco J., Keitel, Kristina, Vieille, Gael, Samaka, Josephine, Mlaganile, Tarsis, Kagoro, Frank, Boillat-Blanco, Noémie, Mbarack, Zainab, Docquier, Mylène, Brito, Francisco, Eibach, Daniel, May, Jürgen, Sothmann, Peter, Aldrich, Cassandra, Lusingu, John, Tapparel, Caroline, D'Acremont, Valérie, Kaiser, Laurent

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Investigation of the Plasma Virome from Cases of Unexplained Febrile Illness in Tanzania from 2013 to 2014: a Comparative Analysis between Unbiased and VirCapSeq-VERT High-Throughp... von Williams, Simon H, Cordey, Samuel, Bhuva, Nishit, Laubscher, Florian, Hartley, Mary-Anne, Boillat-Blanco, Noémie, Mbarack, Zainab, Samaka, Josephine, Mlaganile, Tarsis, Jain, Komal, d'Acremont, Valerie, Kaiser, Laurent, Lipkin, W Ian

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Erratum for Williams et al., "Investigation of the Plasma Virome from Cases of Unexplained Febrile Illness in Tanzania from 2013 to 2014: a Comparative Analysis between Unbiased an... von Williams, Simon H, Cordey, Samuel, Bhuva, Nishit, Laubscher, Florian, Hartley, Mary-Anne, Boillat-Blanco, Noémie, Mbarack, Zainab, Samaka, Josephine, Mlaganile, Tarsis, Jain, Komal, d'Acremont, Valerie, Kaiser, Laurent, Lipkin, W Ian

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Clinical, virologic and immunologic features of a mild case of SARS-CoV-2 reinfection von Vetter, Pauline, Cordey, Samuel, Schibler, Manuel, Vieux, Laure, Despres, Lena, Laubscher, Florian, Andrey, Diego O., Martischang, Romain, Harbarth, Stephan, Cuvelier, Clémence, Bekliz, Meriem, Eckerle, Isabella, Siegrist, Claire-Anne, Didierlaurent, Arnaud M., Eberhardt, Christiane S., Meyer, Benjamin, Kaiser, Laurent

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Imported severe West Nile virus neuro-invasive disease treated by remdesivir in a patient with anti-CD20 therapy for multiple sclerosis: A case report von Shamsher, Ehtesham, Dash, Jonathan, Serratrice, Jacques, Coen, Matteo, Zacharias-Fontanet, Aurélie, Laubscher, Florian, Schibler, Manuel, Uginet, Marjolaine, Vetter, Pauline

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Epidemiological, virological and serological investigation of a SARS-CoV-2 outbreak von Lorthe, Elsa, Bellon, Mathilde, Michielin, Grégoire, Berthelot, Julie, Zaballa, María-Eugenia, Pennacchio, Francesco, Bekliz, Meriem, Laubscher, Florian, Arefi, Fatemeh, Perez-Saez, Javier, Azman, Andrew S, L'Huillier, Arnaud G, Posfay-Barbe, Klara M, Kaiser, Laurent, Guessous, Idris, Maerkl, Sebastian J, Eckerle, Isabella, Stringhini, Silvia

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