eQuilibrator 3.0: a database solution for thermodynamic constant estimation von Beber, Moritz E, Gollub, Mattia G, Mozaffari, Dana, Shebek, Kevin M, Flamholz, Avi I, Milo, Ron, Noor, Elad

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Revisiting Trade-offs between Rubisco Kinetic Parameters von Flamholz, Avi I, Prywes, Noam, Moran, Uri, Davidi, Dan, Bar-On, Yinon M, Oltrogge, Luke M, Alves, Rui, Savage, David, Milo, Ron

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Functional reconstitution of a bacterial CO2 concentrating mechanism in Escherichia coli von Flamholz, Avi I, Dugan, Eli, Blikstad, Cecilia, Gleizer, Shmuel, Ben-Nissan, Roee, Amram, Shira, Antonovsky, Niv, Ravishankar, Sumedha, Noor, Elad, Bar-Even, Arren, Milo, Ron, Savage, David F

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Optical O2 Sensors Also Respond to Redox Active Molecules Commonly Secreted by Bacteria von Flamholz, Avi I., Saccomano, Samuel, Cash, Kevin, Newman, Dianne K.

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Tools for interpretation of wastewater SARS-CoV-2 temporal and spatial trends demonstrated with data collected in the San Francisco Bay Area von Greenwald, Hannah D., Kennedy, Lauren C., Hinkle, Adrian, Whitney, Oscar N., Fan, Vinson B., Crits-Christoph, Alexander, Harris-Lovett, Sasha, Flamholz, Avi I., Al-Shayeb, Basem, Liao, Lauren D., Beyers, Matt, Brown, Daniel, Chakrabarti, Alicia R., Dow, Jason, Frost, Dan, Koekemoer, Mark, Lynch, Chris, Sarkar, Payal, White, Eileen, Kantor, Rose, Nelson, Kara L.

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Matching metabolic supply to demand optimizes microbial growth von Flamholz, Avi I., Goyal, Akshit

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Closed ecosystems extract energy through self-organized nutrient cycles von Goyal, Akshit, Flamholz, Avi I, Petroff, Alexander P, Murugan, Arvind

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Annotation-free prediction of microbial dioxygen utilization von Flamholz, Avi I, Goldford, Joshua E, Richter, Philippa A, Larsson, Elin M, Jinich, Adrian, Fischer, Woodward W, Newman, Dianne K

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Microbial communities: The metabolic rate is the trait von Flamholz, Avi I., Newman, Dianne K.

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Competing constraints shape the nonequilibrium limits of cellular decision-making von Lammers, Nicholas C, Flamholz, Avi I, Garcia, Hernan G

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Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle von Claassens, Nico J., Scarinci, Giovanni, Fischer, Axel, Flamholz, Avi I., Newell, William, Frielingsdorf, Stefan, Lenz, Oliver, Bar-Even, Arren

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Optical O 2 Sensors Also Respond to Redox Active Molecules Commonly Secreted by Bacteria von Flamholz, Avi I, Saccomano, Samuel, Cash, Kevin, Newman, Dianne K

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Protein cost minimization promotes the emergence of coenzyme redundancy von Goldford, Joshua E, George, Ashish B, Flamholz, Avi I, Segrè, Daniel

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Nearest Neighbor Networks: clustering expression data based on gene neighborhoods von Huttenhower, Curtis, Flamholz, Avi I, Landis, Jessica N, Sahi, Sauhard, Myers, Chad L, Olszewski, Kellen L, Hibbs, Matthew A, Siemers, Nathan O, Troyanskaya, Olga G, Coller, Hilary A

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Trajectories for the evolution of bacterial CO2-concentrating mechanisms von Flamholz, Avi I, Dugan, Eli, Panich, Justin, Desmarais, John J, Oltrogge, Luke M, Fischer, Woodward W, Singer, Steven W, Savage, David F

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Uniform binding and negative catalysis at the origin of enzymes von Noor, Elad, Flamholz, Avi I., Jayaraman, Vijay, Ross, Brian L., Cohen, Yair, Patrick, Wayne M., Gruic‐Sovulj, Ita, Tawfik, Dan S.

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Trajectories for the evolution of bacterial CO 2 -concentrating mechanisms von Flamholz, Avi I, Dugan, Eli, Panich, Justin, Desmarais, John J, Oltrogge, Luke M, Fischer, Woodward W, Singer, Steven W, Savage, David F

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Learning to Build a β‑Carboxysome von Blikstad, Cecilia, Flamholz, Avi I, Oltrogge, Luke M, Savage, David F

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Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO2 through geologic time should be reevaluated von Wang, Renée Z, Nichols, Robert J, Liu, Albert K, Flamholz, Avi I, Artier, Juliana, Banda, Doug M, Savage, David F, Eiler, John M, Shih, Patrick M, Fischer, Woodward W

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Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO 2 through geologic time should be reevaluated von Wang, Renée Z, Nichols, Robert J, Liu, Albert K, Flamholz, Avi I, Artier, Juliana, Banda, Doug M, Savage, David F, Eiler, John M, Shih, Patrick M, Fischer, Woodward W

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