Formation of plant metabolic gene clusters within dynamic chromosomal regions von Field, Ben, Fiston-Lavier, Anna-Sophie, Kemen, Ariane, Geisler, Katrin, Quesneville, Hadi, Osbourn, Anne E

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The somatic piRNA pathway controls germline transposition over generations von Barckmann, Bridlin, El-Barouk, Marianne, Pélisson, Alain, Mugat, Bruno, Li, Blaise, Franckhauser, Céline, Fiston Lavier, Anna-Sophie, Mirouze, Marie, Fablet, Marie, Chambeyron, Séverine

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PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets von Pradier, Léa, Tissot, Tazzio, Fiston-Lavier, Anna-Sophie, Bedhomme, Stéphanie

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BREC: an R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes von Mansour, Yasmine, Chateau, Annie, Fiston-Lavier, Anna-Sophie

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Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila von Rech, Gabriel E, Bogaerts-Márquez, María, Barrón, Maite G, Merenciano, Miriam, Villanueva-Cañas, José Luis, Horváth, Vivien, Fiston-Lavier, Anna-Sophie, Luyten, Isabelle, Venkataram, Sandeep, Quesneville, Hadi, Petrov, Dmitri A, González, Josefa

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Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements von McCoy, Rajiv C, Taylor, Ryan W, Blauwkamp, Timothy A, Kelley, Joanna L, Kertesz, Michael, Pushkarev, Dmitry, Petrov, Dmitri A, Fiston-Lavier, Anna-Sophie

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TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches von Mohamed, Mourdas, Sabot, François, Varoqui, Marion, Mugat, Bruno, Audouin, Katell, Pélisson, Alain, Fiston-Lavier, Anna-Sophie, Chambeyron, Séverine

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Compact genome of the Antarctic midge is likely an adaptation to an extreme environment von Kelley, Joanna L., Peyton, Justin T., Fiston-Lavier, Anna-Sophie, Teets, Nicholas M., Yee, Muh-Ching, Johnston, J. Spencer, Bustamante, Carlos D., Lee, Richard E., Denlinger, David L.

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The ace-1 Locus Is Amplified in All Resistant Anopheles gambiae Mosquitoes: Fitness Consequences of Homogeneous and Heterogeneous Duplications von Assogba, Benoît S, Milesi, Pascal, Djogbénou, Luc S, Berthomieu, Arnaud, Makoundou, Patrick, Baba-Moussa, Lamine S, Fiston-Lavier, Anna-Sophie, Belkhir, Khalid, Labbé, Pierrick, Weill, Mylène

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Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions von Guignon, Valentin, Breton, Catherine, Mariette, Jérôme, Sabot, François, Fumey, Julien, Lefort, Vincent, Fiston-Lavier, Anna-Sophie

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A call for benchmarking transposable element annotation methods von Hoen, Douglas R, Hickey, Glenn, Bourque, Guillaume, Casacuberta, Josep, Cordaux, Richard, Feschotte, Cédric, Fiston-Lavier, Anna-Sophie, Hua-Van, Aurélie, Hubley, Robert, Kapusta, Aurélie, Lerat, Emmanuelle, Maumus, Florian, Pollock, David D, Quesneville, Hadi, Smit, Arian, Wheeler, Travis J, Bureau, Thomas E, Blanchette, Mathieu

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A model of segmental duplication formation in Drosophila melanogaster von Fiston-Lavier, Anna-Sophie, Anxolabehere, Dominique, Quesneville, Hadi

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Finding and Characterizing Repeats in Plant Genomes von Nicolas, Jacques, Tempel, Sébastien, Fiston-Lavier, Anna-Sophie, Cherif, Emira

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Population Genomics of Transposable Elements in Drosophila von Barrón, Maite G, Fiston-Lavier, Anna-Sophie, Petrov, Dmitri A, González, Josefa

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Population genomics of transposable elements in Drosophila melanogaster von Petrov, Dmitri A, Fiston-Lavier, Anna-Sophie, Lipatov, Mikhail, Lenkov, Kapa, González, Josefa

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Drosophila melanogaster recombination rate calculator von Fiston-Lavier, Anna-Sophie, Singh, Nadia D., Lipatov, Mikhail, Petrov, Dmitri A.

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T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data von Bogaerts-Márquez, María, Barrón, Maite G, Fiston-Lavier, Anna-Sophie, Vendrell-Mir, Pol, Castanera, Raúl, Casacuberta, Josep M, González, Josefa

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T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data von Fiston-Lavier, Anna-Sophie, Barrón, Maite G, Petrov, Dmitri A, González, Josefa

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Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia von Zhu, Xiaowei, Zhou, Bo, Pattni, Reenal, Gleason, Kelly, Tan, Chunfeng, Kalinowski, Agnieszka, Sloan, Steven, Fiston-Lavier, Anna-Sophie, Mariani, Jessica, Petrov, Dmitri, Barres, Ben A., Duncan, Laramie, Abyzov, Alexej, Vogel, Hannes, Moran, John V., Vaccarino, Flora M., Tamminga, Carol A., Levinson, Douglas F., Urban, Alexander E.

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T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data von Fiston-Lavier, Anna-Sophie, Carrigan, Matthew, Petrov, Dmitri A, González, Josefa

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