Spatial components of molecular tissue biology von Palla, Giovanni, Fischer, David S., Regev, Aviv, Theis, Fabian J.

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Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation von Brunner, Andreas‐David, Thielert, Marvin, Vasilopoulou, Catherine, Ammar, Constantin, Coscia, Fabian, Mund, Andreas, Hoerning, Ole B, Bache, Nicolai, Apalategui, Amalia, Lubeck, Markus, Richter, Sabrina, Fischer, David S, Raether, Oliver, Park, Melvin A, Meier, Florian, Theis, Fabian J, Mann, Matthias

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Predicting antigen specificity of single T cells based on TCR CDR3 regions von Fischer, David S, Wu, Yihan, Schubert, Benjamin, Theis, Fabian J

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MPRAnalyze: statistical framework for massively parallel reporter assays von Ashuach, Tal, Fischer, David S, Kreimer, Anat, Ahituv, Nadav, Theis, Fabian J, Yosef, Nir

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EpiScanpy: integrated single-cell epigenomic analysis von Danese, Anna, Richter, Maria L., Chaichoompu, Kridsadakorn, Fischer, David S., Theis, Fabian J., Colomé-Tatché, Maria

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scTab: Scaling cross-tissue single-cell annotation models von Fischer, Felix, Fischer, David S., Mukhin, Roman, Isaev, Andrey, Biederstedt, Evan, Villani, Alexandra-Chloé, Theis, Fabian J.

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Inferring population dynamics from single-cell RNA-sequencing time series data von Fischer, David S., Fiedler, Anna K., Kernfeld, Eric M., Genga, Ryan M. J., Bastidas-Ponce, Aimée, Bakhti, Mostafa, Lickert, Heiko, Hasenauer, Jan, Maehr, Rene, Theis, Fabian J.

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Toward modeling metabolic state from single-cell transcriptomics von Hrovatin, Karin, Fischer, David S., Theis, Fabian J.

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Sfaira accelerates data and model reuse in single cell genomics von Fischer, David S, Dony, Leander, König, Martin, Moeed, Abdul, Zappia, Luke, Heumos, Lukas, Tritschler, Sophie, Holmberg, Olle, Aliee, Hananeh, Theis, Fabian J

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Probing cell identity hierarchies by fate titration and collision during direct reprogramming von Hersbach, Bob A, Fischer, David S, Masserdotti, Giacomo, Deeksha, Mojžišová, Karolina, Waltzhöni, Thomas, Rodriguez‐Terrones, Diego, Heinig, Matthias, Theis, Fabian J, Götz, Magdalena, Stricker, Stefan H

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Group Testing for SARS-CoV-2 Allows for Up to 10-Fold Efficiency Increase Across Realistic Scenarios and Testing Strategies von Verdun, Claudio M, Fuchs, Tim, Harar, Pavol, Elbrächter, Dennis, Fischer, David S, Berner, Julius, Grohs, Philipp, Theis, Fabian J, Krahmer, Felix

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Modeling intercellular communication in tissues using spatial graphs of cells von Fischer, David S., Schaar, Anna C., Theis, Fabian J.

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Impulse model-based differential expression analysis of time course sequencing data von Fischer, David S, Theis, Fabian J, Yosef, Nir

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Concepts and limitations for learning developmental trajectories from single cell genomics von Tritschler, Sophie, Büttner, Maren, Fischer, David S, Lange, Marius, Bergen, Volker, Lickert, Heiko, Theis, Fabian J

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Cell-Type-Specific Impact of Glucocorticoid Receptor Activation on the Developing Brain: A Cerebral Organoid Study von Cruceanu, Cristiana, Dony, Leander, Krontira, Anthi C, Fischer, David S, Roeh, Simone, Di Giaimo, Rossella, Kyrousi, Christina, Kaspar, Lea, Arloth, Janine, Czamara, Darina, Gerstner, Nathalie, Martinelli, Silvia, Wehner, Stefanie, Breen, Michael S, Koedel, Maik, Sauer, Susann, Sportelli, Vincenza, Rex-Haffner, Monika, Cappello, Silvia, Theis, Fabian J, Binder, Elisabeth B

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Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data von Angerer, Philipp, Fischer, David S, Theis, Fabian J, Scialdone, Antonio, Marr, Carsten

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Modeling fragment counts improves single-cell ATAC-seq analysis von Martens, Laura D., Fischer, David S., Yépez, Vicente A., Theis, Fabian J., Gagneur, Julien

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Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’ von Fischer, David S., Ansari, Meshal, Wagner, Karolin I., Jarosch, Sebastian, Huang, Yiqi, Mayr, Christoph H., Strunz, Maximilian, Lang, Niklas J., D’Ippolito, Elvira, Hammel, Monika, Mateyka, Laura, Weber, Simone, Wolff, Lisa S., Witter, Klaus, Fernandez, Isis E., Leuschner, Gabriela, Milger, Katrin, Frankenberger, Marion, Nowak, Lorenz, Heinig-Menhard, Katharina, Koch, Ina, Stoleriu, Mircea G., Hilgendorff, Anne, Behr, Jürgen, Pichlmair, Andreas, Schubert, Benjamin, Theis, Fabian J., Busch, Dirk H., Schiller, Herbert B., Schober, Kilian

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Microstructure and fracture of anomalous eutectic silicon-disilicide composites von Fischer, David S., Schuh, Christopher A.

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Effect of a Rising R-Curve on the Sliding Wear of Silicon-Disilicide In Situ Composites von Fischer, David S., Schuh, Christopher A.

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