Detection and characterization of lung cancer using cell-free DNA fragmentomes von Mathios, Dimitrios, Johansen, Jakob Sidenius, Cristiano, Stephen, Medina, Jamie E., Phallen, Jillian, Larsen, Klaus R., Bruhm, Daniel C., Niknafs, Noushin, Ferreira, Leonardo, Adleff, Vilmos, Chiao, Jia Yuee, Leal, Alessandro, Noe, Michael, White, James R., Arun, Adith S., Hruban, Carolyn, Annapragada, Akshaya V., Jensen, Sarah Østrup, Ørntoft, Mai-Britt Worm, Madsen, Anders Husted, Carvalho, Beatriz, de Wit, Meike, Carey, Jacob, Dracopoli, Nicholas C., Maddala, Tara, Fang, Kenneth C., Hartman, Anne-Renee, Forde, Patrick M., Anagnostou, Valsamo, Brahmer, Julie R., Fijneman, Remond J. A., Nielsen, Hans Jørgen, Meijer, Gerrit A., Andersen, Claus Lindbjerg, Mellemgaard, Anders, Bojesen, Stig E., Scharpf, Robert B., Velculescu, Victor E.

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Data-Independent Acquisition Mass Spectrometry Analysis of FFPE Rectal Cancer Samples Offers In-Depth Proteomics Characterization of the Response to Neoadjuvant Chemoradiotherapy von Stanojevic, Aleksandra, Samiotaki, Martina, Lygirou, Vasiliki, Marinkovic, Mladen, Nikolic, Vladimir, Stojanovic-Rundic, Suzana, Jankovic, Radmila, Vlahou, Antonia, Panayotou, George, Fijneman, Remond J. A., Castellví-Bel, Sergi, Zoidakis, Jerome, Cavic, Milena

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CIBRA identifies genomic alterations with a system-wide impact on tumor biology von Lakbir, Soufyan, Buranelli, Caterina, Meijer, Gerrit A, Heringa, Jaap, Fijneman, Remond J A, Abeln, Sanne

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Genome-wide cell-free DNA fragmentation in patients with cancer von Cristiano, Stephen, Leal, Alessandro, Phallen, Jillian, Fiksel, Jacob, Adleff, Vilmos, Bruhm, Daniel C., Jensen, Sarah Østrup, Medina, Jamie E., Hruban, Carolyn, White, James R., Palsgrove, Doreen N., Niknafs, Noushin, Anagnostou, Valsamo, Forde, Patrick, Naidoo, Jarushka, Marrone, Kristen, Brahmer, Julie, Woodward, Brian D., Husain, Hatim, van Rooijen, Karlijn L., Ørntoft, Mai-Britt Worm, Madsen, Anders Husted, van de Velde, Cornelis J. H., Verheij, Marcel, Cats, Annemieke, Punt, Cornelis J. A., Vink, Geraldine R., van Grieken, Nicole C. T., Koopman, Miriam, Fijneman, Remond J. A., Johansen, Julia S., Nielsen, Hans Jørgen, Meijer, Gerrit A., Andersen, Claus Lindbjerg, Scharpf, Robert B., Velculescu, Victor E.

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Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer von Jacobsen, Annika, Bosch, Linda J. W., Martens-de Kemp, Sanne R., Carvalho, Beatriz, Sillars-Hardebol, Anke H., Dobson, Richard J., de Rinaldis, Emanuele, Meijer, Gerrit A., Abeln, Sanne, Heringa, Jaap, Fijneman, Remond J. A., Feenstra, K. Anton

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KCNQ1 and lymphovascular invasion are key features in a prognostic classifier for stage II and III colon cancer von Uil, Sjoerd H, Coupé, Veerle M H, Bril, Herman, Meijer, Gerrit A, Fijneman, Remond J A, Stockmann, Hein B A C

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Silencing Core Spliceosome Sm Gene Expression Induces a Cytotoxic Splicing Switch in the Proteasome Subunit Beta 3 mRNA in Non-Small Cell Lung Cancer Cells von Blijlevens, Maxime, Komor, Malgorzata A., Sciarrillo, Rocco, Smit, Egbert F., Fijneman, Remond J. A., van Beusechem, Victor W.

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Cell-Free Circulating (Tumor) DNA before Surgery as a Prognostic Factor in Non-Metastatic Colorectal Cancer: A Systematic Review von Schraa, Suzanna J, van Rooijen, Karlijn L, Koopman, Miriam, Vink, Geraldine R, Fijneman, Remond J A

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Comparison of NTRK fusion detection methods in microsatellite-instability-high metastatic colorectal cancer von Schraa, Suzanna J., Stelloo, Ellen, Laclé, Miangela M., Swennenhuis, Joost F., Brosens, Lodewijk A. A., Fijneman, Remond J. A., Feitsma, Harma, Koopman, Miriam, de Leng, Wendy W., Vink, Geraldine R., Bol, Guus M.

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A scenario‐drafting study to explore potential future implementation pathways of circulating tumor DNA testing in oncology von Kramer, Astrid, Rubio‐Alarcón, Carmen, Broek, Daan, Vessies, Daan C. L., van't Erve, Iris, Meijer, Gerrit A., Vink, Geraldine R., Schuuring, Ed, Fijneman, Remond J. A., Coupé, Veerle M. H., Retèl, Valesca P.

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High expression of secretory leukocyte protease inhibitor (SLPI) in stage III micro-satellite stable colorectal cancer is associated with reduced disease recurrence von Nugteren, Sandrine, den Uil, Sjoerd H., Delis-van Diemen, Pien M., Simons-Oosterhuis, Ytje, Lindenbergh-Kortleve, Dicky J., van Haaften, Daniëlle H., Stockmann, Hein B. A. C., Sanders, Joyce, Meijer, Gerrit A., Fijneman, Remond J. A., Samsom, Janneke N.

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TPX2 and AURKA promote 20q amplicon-driven colorectal adenoma to carcinoma progression von Sillars-Hardebol, Anke H, Carvalho, Beatriz, Tijssen, Marianne, Beliën, Jeroen A M, de Wit, Meike, Delis-van Diemen, Pien M, Pontén, Fredrik, van de Wiel, Mark A, Fijneman, Remond J A, Meijer, Gerrit A

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Tumour break load is a biologically relevant feature of genomic instability with prognostic value in colorectal cancer von Lakbir, Soufyan, Lahoz, Sara, Cuatrecasas, Miriam, Camps, Jordi, Glas, Roel A., Heringa, Jaap, Meijer, Gerrit A., Abeln, Sanne, Fijneman, Remond J.A.

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Quantitative analysis of CDX2 protein expression improves its clinical utility as a prognostic biomarker in stage II and III colon cancer von den Uil, Sjoerd H., de Wit, Meike, Slebos, Robbert J.C., Delis-van Diemen, Pien M., Sanders, Joyce, Piersma, Sander R., Pham, Thang V., Coupé, Veerle M.H., Bril, Herman, Stockmann, Hein B.A.C., Jimenez, Connie R., Meijer, Gerrit A., Fijneman, Remond J.A.

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Molecular characterization of colorectal adenomas reveals POFUT1 as a candidate driver of tumor progression von Komor, Malgorzata A., Wit, Meike, Berg, Jose, Martens de Kemp, Sanne R., Delis‐van Diemen, Pien M., Bolijn, Anne S., Tijssen, Marianne, Schelfhorst, Tim, Piersma, Sander R., Chiasserini, Davide, Sanders, Joyce, Rausch, Christian, Hoogstrate, Youri, Stubbs, Andrew P., Jong, Mark, Jenster, Guido, Carvalho, Beatriz, Meijer, Gerrit A., Jimenez, Connie R., Fijneman, Remond J.A.

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Cancer treatment monitoring using cell-free DNA fragmentomes von van ’t Erve, Iris, Alipanahi, Bahar, Lumbard, Keith, Skidmore, Zachary L., Rinaldi, Lorenzo, Millberg, Laurel K., Carey, Jacob, Chesnick, Bryan, Cristiano, Stephen, Portwood, Carter, Wu, Tony, Peters, Erica, Bolhuis, Karen, Punt, Cornelis J. A., Tom, Jennifer, Bach, Peter B., Dracopoli, Nicholas C., Meijer, Gerrit A., Scharpf, Robert B., Velculescu, Victor E., Fijneman, Remond J. A., Leal, Alessandro

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Overexpression of the miR-17-92 cluster in colorectal adenoma organoids causes a carcinoma-like gene expression signature von Martens-de Kemp, Sanne R., Komor, Malgorzata A., Hegi, Rosa, Bolijn, Anne S., Tijssen, Marianne, de Groen, Florence L.M., Depla, Annekatrien, van Leerdam, Monique, Meijer, Gerrit A., Fijneman, Remond J.A., Carvalho, Beatriz

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Loss of enteric neuronal Ndrg4 promotes colorectal cancer via increased release of Nid1 and Fbln2 von Vaes, Nathalie, Schonkeren, Simone L, Rademakers, Glenn, Holland, Amy M, Koch, Alexander, Gijbels, Marion J, Keulers, Tom G, de Wit, Meike, Moonen, Laura, Van der Meer, Jaleesa R M, van den Boezem, Edith, Wolfs, Tim G A M, Threadgill, David W, Demmers, Jeroen, Fijneman, Remond J A, Jimenez, Connie R, Vanden Berghe, Pieter, Smits, Kim M, Rouschop, Kasper M A, Boesmans, Werend, Hofstra, Robert M W, Melotte, Veerle

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Metastatic Colorectal Cancer Treatment Response Evaluation by Ultra-Deep Sequencing of Cell-Free DNA and Matched White Blood Cells von van 't Erve, Iris, Medina, Jamie E, Leal, Alessandro, Papp, Eniko, Phallen, Jillian, Adleff, Vilmos, Chiao, Elaine Jiayuee, Arun, Adith S, Bolhuis, Karen, Simmons, John K, Karandikar, Aanavi, Valkenburg, Kenneth C, Sausen, Mark, Angiuoli, Samuel V, Scharpf, Robert B, Punt, Cornelis J A, Meijer, Gerrit A, Velculescu, Victor E, Fijneman, Remond J A

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Widespread and Functional RNA Circularization in Localized Prostate Cancer von Chen, Sujun, Huang, Vincent, Xu, Xin, Livingstone, Julie, Soares, Fraser, Jeon, Jouhyun, Zeng, Yong, Hua, Junjie Tony, Petricca, Jessica, Guo, Haiyang, Wang, Miranda, Yousif, Fouad, Zhang, Yuzhe, Donmez, Nilgun, Ahmed, Musaddeque, Volik, Stas, Lapuk, Anna, Chua, Melvin L.K., Heisler, Lawrence E., Foucal, Adrien, Fox, Natalie S., Fraser, Michael, Bhandari, Vinayak, Shiah, Yu-Jia, Guan, Jiansheng, Li, Jixi, Orain, Michèle, Picard, Valérie, Hovington, Hélène, Bergeron, Alain, Lacombe, Louis, Fradet, Yves, Têtu, Bernard, Liu, Stanley, Feng, Felix, Wu, Xue, Shao, Yang W., Komor, Malgorzata A., Sahinalp, Cenk, Collins, Colin, Hoogstrate, Youri, de Jong, Mark, Fijneman, Remond J.A., Fei, Teng, Jenster, Guido, van der Kwast, Theodorus, Bristow, Robert G., Boutros, Paul C., He, Housheng Hansen

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