Toward a Shared Vision for Cancer Genomic Data von Grossman, Robert L, Heath, Allison P, Ferretti, Vincent, Varmus, Harold E, Lowy, Douglas R, Kibbe, Warren A, Staudt, Louis M

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The International Cancer Genome Consortium Data Portal von Zhang, Junjun, Bajari, Rosita, Andric, Dusan, Gerthoffert, Francois, Lepsa, Alexandru, Nahal-Bose, Hardeep, Stein, Lincoln D., Ferretti, Vincent

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The NCI Genomic Data Commons as an engine for precision medicine von Jensen, Mark A., Ferretti, Vincent, Grossman, Robert L., Staudt, Louis M.

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Analysis of Epstein-Barr Virus Genomes and Expression Profiles in Gastric Adenocarcinoma von Borozan, Ivan, Zapatka, Marc, Frappier, Lori, Ferretti, Vincent

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Fostering population-based cohort data discovery: The Maelstrom Research cataloguing toolkit von Bergeron, Julie, Doiron, Dany, Marcon, Yannick, Ferretti, Vincent, Fortier, Isabel

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Correction for Borozan et al., "Analysis of Epstein-Barr Virus Genomes and Expression Profiles in Gastric Adenocarcinoma" von Borozan, Ivan, Zapatka, Marc, Frappier, Lori, Ferretti, Vincent

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Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24 von Zanke, Brent W, Bezieau, Stephane, Kury, Sebastien, Green, Roger, Chanock, Stephen J, Campbell, Harry, Gallinger, Steven, Cotterchio, Michelle, Blanche, Helene, Younghusband, Ban, Hudson, Thomas J, Tubacher, Emmanuel, Crowdy, Edgar, Farrington, Susan M, Roumy, Stéphanie, Olivier, Jean-François, Green, Jane, Campbell, Peter, Kustra, Rafal, O'Shea, Anne Marie, Porteous, Mary E M, Montpetit, Alexandre, Ferretti, Vincent, Prendergast, James, Sundararajan, Saravanan, Zogopoulos, George, Newcomb, Polly, Chiang, Theodore, Robidoux, Frédérick, Bonaiti-Pellié, Catherine, Buecher, Bruno, Tenesa, Albert, Olschwang, Sylviane, Sahbatou, Mourad, Riboli, Elio, Laflamme, Philippe, Rangrej, Jagadish, Sladek, Robert, Thomas, Gilles, Greenwood, Celia MT, McLaughlin, John, Potter, John, Dunlop, Malcolm G

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A user guide for the online exploration and visualization of PCAWG data von Goldman, Mary J., Zhang, Junjun, Fonseca, Nuno A., Cortés-Ciriano, Isidro, Xiang, Qian, Craft, Brian, Piñeiro-Yáñez, Elena, O’Connor, Brian D., Bazant, Wojciech, Barrera, Elisabet, Muñoz-Pomer, Alfonso, Petryszak, Robert, Füllgrabe, Anja, Al-Shahrour, Fatima, Keays, Maria, Haussler, David, Weinstein, John N., Huber, Wolfgang, Valencia, Alfonso, Park, Peter J., Papatheodorou, Irene, Zhu, Jingchun, Ferretti, Vincent, Vazquez, Miguel

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The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows [version 1; peer review: 2 approved] von O'Connor, Brian D, Yuen, Denis, Chung, Vincent, Duncan, Andrew G, Liu, Xiang Kun, Patricia, Janice, Paten, Benedict, Stein, Lincoln, Ferretti, Vincent

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Evaluation of alignment algorithms for discovery and identification of pathogens using RNA-Seq von Borozan, Ivan, Watt, Stuart N, Ferretti, Vincent

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CaPSID: a bioinformatics platform for computational pathogen sequence identification in human genomes and transcriptomes von Borozan, Ivan, Wilson, Shane, Blanchette, Paola, Laflamme, Philippe, Watt, Stuart N, Krzyzanowski, Paul M, Sircoulomb, Fabrice, Rottapel, Robert, Branton, Philip E, Ferretti, Vincent

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Data harmonization and federated analysis of population-based studies: the BioSHaRE project von Doiron, Dany, Burton, Paul, Marcon, Yannick, Gaye, Amadou, Wolffenbuttel, Bruce H R, Perola, Markus, Stolk, Ronald P, Foco, Luisa, Minelli, Cosetta, Waldenberger, Melanie, Holle, Rolf, Kvaløy, Kirsti, Hillege, Hans L, Tassé, Anne-Marie, Ferretti, Vincent, Fortier, Isabel

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P832: Discovering phenotype-gene correlations using Variant WorkBench von Guo, Yiran, Li, Qi, Rozowsky, Jared, Costanza, Jeremy, Mattioni, Michele, Thibert, Jean-Philippe, Brown, Miguel, Higgins, David, Zhu, Yuankun, Heath, Allison, Resnick, Adam, Ferretti, Vincent

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P597: All for One Clinical Genomics Network: Linking Canadian diagnostic laboratories to share genome-wide sequencing data to support rare disease diagnosis von Price, E. Magda, Gillespie, Meredith, Chisholm, Caitlin, Attali, Ruben, Silver, Talia, Szuto, Anna, Team, GSO Study, Michaud, Jacques, Bulman, Dennis, Lerner-Ellis, Jordan, Zawati, Ma'n, Ferretti, Vincent, Bernier, Francois, Marshall, Christian, Boycott, Kym

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CSSSCL: a python package that uses combined sequence similarity scores for accurate taxonomic classification of long and short sequence reads von Borozan, Ivan, Ferretti, Vincent

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Software Application Profile: Opal and Mica: open-source software solutions for epidemiological data management, harmonization and dissemination von Doiron, Dany, Marcon, Yannick, Fortier, Isabel, Burton, Paul, Ferretti, Vincent

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Integrating alignment-based and alignment-free sequence similarity measures for biological sequence classification von Borozan, Ivan, Watt, Stuart, Ferretti, Vincent

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The landscape of viral associations in human cancers von Zapatka, Marc, Borozan, Ivan, Brewer, Daniel S., Iskar, Murat, Grundhoff, Adam, Alawi, Malik, Desai, Nikita, Sültmann, Holger, Moch, Holger, Cooper, Colin S., Eils, Roland, Ferretti, Vincent, Lichter, Peter

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Maelstrom Research guidelines for rigorous retrospective data harmonization von Fortier, Isabel, Raina, Parminder, Van den Heuvel, Edwin R, Griffith, Lauren E, Craig, Camille, Saliba, Matilda, Doiron, Dany, Stolk, Ronald P, Knoppers, Bartha M, Ferretti, Vincent, Granda, Peter, Burton, Paul

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Germline EPHB2 receptor variants in familial colorectal cancer von Zogopoulos, George, Jorgensen, Claus, Bacani, Julinor, Montpetit, Alexandre, Lepage, Pierre, Ferretti, Vincent, Chad, Lauren, Selvarajah, Subani, Zanke, Brent, Hudson, Thomas J, Pawson, Tony, Gallinger, Steven

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