Differential cytokine contributions of perivascular haematopoietic stem cell niches von Asada, Noboru, Kunisaki, Yuya, Pierce, Halley, Wang, Zichen, Fernandez, Nicolas F., Birbrair, Alexander, Ma’ayan, Avi, Frenette, Paul S.

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The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins von Rouillard, Andrew D, Gundersen, Gregory W, Fernandez, Nicolas F, Wang, Zichen, Monteiro, Caroline D, McDermott, Michael G, Ma'ayan, Avi

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LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures von Duan, Qiaonan, Flynn, Corey, Niepel, Mario, Hafner, Marc, Muhlich, Jeremy L, Fernandez, Nicolas F, Rouillard, Andrew D, Tan, Christopher M, Chen, Edward Y, Golub, Todd R, Sorger, Peter K, Subramanian, Aravind, Ma'ayan, Avi

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Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data von Fernandez, Nicolas F., Gundersen, Gregory W., Rahman, Adeeb, Grimes, Mark L., Rikova, Klarisa, Hornbeck, Peter, Ma’ayan, Avi

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Peripheral immune cell reactivity and neural response to reward in patients with depression and anhedonia von Costi, Sara, Morris, Laurel S., Collins, Abigail, Fernandez, Nicolas F., Patel, Manishkumar, Xie, Hui, Kim-Schulze, Seunghee, Stern, Emily R., Collins, Katherine A., Cathomas, Flurin, Parides, Michael K., Whitton, Alexis E., Pizzagalli, Diego A., Russo, Scott J., Murrough, James W.

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Single-cell immune landscape of human atherosclerotic plaques von Fernandez, Dawn M., Rahman, Adeeb H., Fernandez, Nicolas F., Chudnovskiy, Aleksey, Amir, El-ad David, Amadori, Letizia, Khan, Nayaab S., Wong, Christine K., Shamailova, Roza, Hill, Christopher A., Wang, Zichen, Remark, Romain, Li, Jennifer R., Pina, Christian, Faries, Christopher, Awad, Ahmed J., Moss, Noah, Bjorkegren, Johan L. M., Kim-Schulze, Seunghee, Gnjatic, Sacha, Ma’ayan, Avi, Mocco, J, Faries, Peter, Merad, Miriam, Giannarelli, Chiara

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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update von Kuleshov, Maxim V, Jones, Matthew R, Rouillard, Andrew D, Fernandez, Nicolas F, Duan, Qiaonan, Wang, Zichen, Koplev, Simon, Jenkins, Sherry L, Jagodnik, Kathleen M, Lachmann, Alexander, McDermott, Michael G, Monteiro, Caroline D, Gundersen, Gregory W, Ma'ayan, Avi

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Length of gestation and birth weight are associated with indices of combined kidney biomarkers in early childhood von Levin-Schwartz, Yuri, Curtin, Paul, Svensson, Katherine, Fernandez, Nicolas F, Kim-Schulze, Seunghee, Hair, Gleicy M, Flores, Daniel, Pantic, Ivan, Tamayo-Ortiz, Marcela, Luisa Pizano-Zárate, María, Gennings, Chris, Satlin, Lisa M, Baccarelli, Andrea A, Tellez-Rojo, Martha M, Wright, Robert O, Sanders, Alison P

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Human lung cancer harbors spatially organized stem-immunity hubs associated with response to immunotherapy von Chen, Jonathan H., Nieman, Linda T., Spurrell, Maxwell, Jorgji, Vjola, Elmelech, Liad, Richieri, Peter, Xu, Katherine H., Madhu, Roopa, Parikh, Milan, Zamora, Izabella, Mehta, Arnav, Nabel, Christopher S., Freeman, Samuel S., Pirl, Joshua D., Lu, Chenyue, Meador, Catherine B., Barth, Jaimie L., Sakhi, Mustafa, Tang, Alexander L., Sarkizova, Siranush, Price, Colles, Fernandez, Nicolas F., Emanuel, George, He, Jiang, Van Raay, Katrina, Reeves, Jason W., Yizhak, Keren, Hofree, Matan, Shih, Angela, Sade-Feldman, Moshe, Boland, Genevieve M., Pelka, Karin, Aryee, Martin J., Mino-Kenudson, Mari, Gainor, Justin F., Korsunsky, Ilya, Hacohen, Nir

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Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets von Duan, Qiaonan, Wang, Zichen, Fernandez, Nicolas F, Rouillard, Andrew D, Tan, Christopher M, Benes, Cyril H, Ma'ayan, Avi

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Systems Analysis Implicates WAVE2 Complex in the Pathogenesis of Developmental Left-Sided Obstructive Heart Defects von Edwards, Jonathan J., Rouillard, Andrew D., Fernandez, Nicolas F., Wang, Zichen, Lachmann, Alexander, Shankaran, Sunita S., Bisgrove, Brent W., Demarest, Bradley, Turan, Nahid, Srivastava, Deepak, Bernstein, Daniel, Deanfield, John, Giardini, Alessandro, Porter, George, Kim, Richard, Roberts, Amy E., Newburger, Jane W., Goldmuntz, Elizabeth, Brueckner, Martina, Lifton, Richard P., Seidman, Christine E., Chung, Wendy K., Tristani-Firouzi, Martin, Yost, H. Joseph, Ma’ayan, Avi, Gelb, Bruce D.

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ZEB2 Regulates Activation and Exhaustion Programming of CD8 T Cells in Atherosclerosis von Fernandez, Dawn, Fernandez, Nicolas F., Rahman, Adeeb, Hill, Christopher, Shamailova, Roza, Kim-Schulze, Seunghee, Mocco, J., Faries, Peter, Merad, Miriam, Giannarelli, Chiara

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Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd von Wang, Zichen, Monteiro, Caroline D., Jagodnik, Kathleen M., Fernandez, Nicolas F., Gundersen, Gregory W., Rouillard, Andrew D., Jenkins, Sherry L., Feldmann, Axel S., Hu, Kevin S., McDermott, Michael G., Duan, Qiaonan, Clark, Neil R., Jones, Matthew R., Kou, Yan, Goff, Troy, Woodland, Holly, Amaral, Fabio M R., Szeto, Gregory L., Fuchs, Oliver, Schüssler-Fiorenza Rose, Sophia M., Sharma, Shvetank, Schwartz, Uwe, Bausela, Xabier Bengoetxea, Szymkiewicz, Maciej, Maroulis, Vasileios, Salykin, Anton, Barra, Carolina M., Kruth, Candice D., Bongio, Nicholas J., Mathur, Vaibhav, Todoric, Radmila D, Rubin, Udi E., Malatras, Apostolos, Fulp, Carl T., Galindo, John A., Motiejunaite, Ruta, Jüschke, Christoph, Dishuck, Philip C., Lahl, Katharina, Jafari, Mohieddin, Aibar, Sara, Zaravinos, Apostolos, Steenhuizen, Linda H., Allison, Lindsey R., Gamallo, Pablo, de Andres Segura, Fernando, Dae Devlin, Tyler, Pérez-García, Vicente, Ma’ayan, Avi

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Abstract 13468: Single-Cell Driven Drug Repositioning Approach Identifies a New Anti-Atherosclerotic Compound Targeting Myeloid Cells von Amadori, Letizia, Calcagno, Claudia, Fernandez, Dawn M, Koplev, Simon, Fernandez, Nicolas F, Kaur, Ravneet, Shamailova, Roza, Chong, Peik Sean, Sajja, Swathy, Naidu, Sonum, Ghotbi, Adam, Soler, Raphael, Hill, Christopher, Fayad, Zahi A, Ma'ayan, Avi, Giannarelli, Chiara

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L1000CDS2: LINCS L1000 characteristic direction signatures search engine von Duan, Qiaonan, Reid, St Patrick, Clark, Neil R, Wang, Zichen, Fernandez, Nicolas F, Rouillard, Andrew D, Readhead, Ben, Tritsch, Sarah R, Hodos, Rachel, Hafner, Marc, Niepel, Mario, Sorger, Peter K, Dudley, Joel T, Bavari, Sina, Panchal, Rekha G, Ma’ayan, Avi

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LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures von Duan, Qiaonan, Flynn, Corey, Niepel, Mario, Hafner, Marc, Muhlich, Jeremy L, Fernandez, Nicolas F, Rouillard, Andrew D, Tan, Christopher M, Chen, Edward Y, Golub, Todd R, Sorger, Peter K, Subramanian, Aravind, Ma'ayan, Avi

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Socioeconomic differences in COVID-19 infection, hospitalisation and mortality in urban areas in a region in the South of Europe von Fernández-Martínez, Nicolás F, Ruiz-Montero, Rafael, Gómez-Barroso, Diana, Rodríguez-Torronteras, Alejandro, Lorusso, Nicola, Salcedo-Leal, Inmaculada, Sordo, Luis

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L1000CDS 2 : LINCS L1000 characteristic direction signatures search engine von Duan, Qiaonan, Reid, St Patrick, Clark, Neil R, Wang, Zichen, Fernandez, Nicolas F, Rouillard, Andrew D, Readhead, Ben, Tritsch, Sarah R, Hodos, Rachel, Hafner, Marc, Niepel, Mario, Sorger, Peter K, Dudley, Joel T, Bavari, Sina, Panchal, Rekha G, Ma'ayan, Avi

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L1000CDS2: LINCS L1000 characteristic direction signatures search engine von Duan, Qiaonan, Reid, St Patrick, Clark, Neil R, Wang, Zichen, Fernandez, Nicolas F, Rouillard, Andrew D, Readhead, Ben, Tritsch, Sarah R, Hodos, Rachel, Hafner, Marc, Niepel, Mario, Sorger, Peter K, Dudley, Joel T, Bavari, Sina, Panchal, Rekha G, Ma’ayan, Avi

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L1000CDS2: LINCS L1000 characteristic direction signatures search engine von Duan, Qiaonan, Reid, St Patrick, Clark, Neil R, Wang, Zichen, Fernandez, Nicolas F, Rouillard, Andrew D, Readhead, Ben, Tritsch, Sarah R, Hodos, Rachel, Hafner, Marc, Niepel, Mario, Sorger, Peter K, Dudley, Joel T, Bavari, Sina, Panchal, Rekha G, Ma’ayan, Avi

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