Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progression von Ewing, Ewoud, Kular, Lara, Fernandes, Sunjay J., Karathanasis, Nestoras, Lagani, Vincenzo, Ruhrmann, Sabrina, Tsamardinos, Ioannis, Tegner, Jesper, Piehl, Fredrik, Gomez-Cabrero, David, Jagodic, Maja

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Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation von Ferreirós-Vidal, Isabel, Carroll, Thomas, Zhang, Tianyi, Lagani, Vincenzo, Ramirez, Ricardo N, Ing-Simmons, Elizabeth, Gómez-Valadés, Alicia G, Cooper, Lee, Liang, Ziwei, Papoutsoglou, Georgios, Dharmalingam, Gopuraja, Guo, Ya, Tarazona, Sonia, Fernandes, Sunjay J, Noori, Peri, Silberberg, Gilad, Fisher, Amanda G, Tsamardinos, Ioannis, Mortazavi, Ali, Lenhard, Boris, Conesa, Ana, Tegner, Jesper, Merkenschlager, Matthias, Gomez-Cabrero, David

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Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties von Annadurai, Ramasamy S, Jayakumar, Vasanthan, Mugasimangalam, Raja C, Katta, Mohan A V S K, Anand, Sanchita, Gopinathan, Sreeja, Sarma, Santosh Prasad, Fernandes, Sunjay Jude, Mullapudi, Nandita, Murugesan, S, Rao, Sudha Narayana

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Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progressionResearch in co... von Ewoud Ewing, Lara Kular, Sunjay J. Fernandes, Nestoras Karathanasis, Vincenzo Lagani, Sabrina Ruhrmann, Ioannis Tsamardinos, Jesper Tegner, Fredrik Piehl, David Gomez-Cabrero, Maja Jagodic

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Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation von Ferreiros-Vidal, Isabel, Carroll, Thomas, Zhang, Tianyi, Lagani, Vincenzo, Ramirez, Ricardo N, Ing-Simmons, Elizabeth, Gomez-Valades, Alicia G, Cooper, Lee, Liang, Ziwei, Papoutsoglou, Georgios, Dharmalingam, Gopuraja, Guo, Ya, Tarazona, Sonia, Fernandes, Sunjay J, Noori, Peri

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Hypermethylation of MIR21 in CD4+ T cells from patients with relapsing-remitting multiple sclerosis associates with lower miRNA-21 levels and concomitant up-regulation of its targe... von Ruhrmann, Sabrina, Ewing, Ewoud, Piket, Eliane, Kular, Lara, Cetrulo Lorenzi, Julio Cesar, Fernandes, Sunjay Jude, Morikawa, Hiromasa, Aeinehband, Shahin, Sayols-Baixeras, Sergi, Aslibekyan, Stella, Absher, Devin M, Arnett, Donna K, Tegner, Jesper, Gomez-Cabrero, David, Piehl, Fredrik, Jagodic, Maja

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Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 von Schmidt, Angelika, Marabita, Francesco, Kiani, Narsis A, Gross, Catharina C, Johansson, Henrik J, Éliás, Szabolcs, Rautio, Sini, Eriksson, Matilda, Fernandes, Sunjay Jude, Silberberg, Gilad, Ullah, Ubaid, Bhatia, Urvashi, Lähdesmäki, Harri, Lehtiö, Janne, Gomez-Cabrero, David, Wiendl, Heinz, Lahesmaa, Riitta, Tegnér, Jesper

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Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients von Fernandes, Sunjay Jude, Morikawa, Hiromasa, Ewing, Ewoud, Ruhrmann, Sabrina, Joshi, Rubin Narayan, Lagani, Vincenzo, Karathanasis, Nestoras, Khademi, Mohsen, Planell, Nuria, Schmidt, Angelika, Tsamardinos, Ioannis, Olsson, Tomas, Piehl, Fredrik, Kockum, Ingrid, Jagodic, Maja, Tegnér, Jesper, Gomez-Cabrero, David

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Impact of genetic risk loci for multiple sclerosis on expression of proximal genes in patients von James, Tojo, Lindén, Magdalena, Morikawa, Hiromasa, Fernandes, Sunjay Jude, Ruhrmann, Sabrina, Huss, Mikael, Brandi, Maya, Piehl, Fredrik, Jagodic, Maja, Tegnér, Jesper, Khademi, Mohsen, Olsson, Tomas, Gomez-Cabrero, David, Kockum, Ingrid

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Phosphatase inhibitor PPP1R11 modulates resistance of human T cells toward Treg‐mediated suppression of cytokine expression von Joshi, Rubin N., Fernandes, Sunjay Jude, Shang, Ming‐Mei, Kiani, Narsis A., Gomez‐Cabrero, David, Tegnér, Jesper, Schmidt, Angelika

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Deep characterization of paired chromatin and transcriptomes in four immune cell types from multiple sclerosis patients von Fernandes, Sunjay Jude, Ericsson, Matilda, Khademi, Mohsen, Jagodic, Maja, Olsson, Tomas, Gomez-Cabrero, David, Kockum, Ingrid, Tegnér, Jesper

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Multiplexed next-generation sequencing and de novo assembly to obtain near full-length HIV-1 genome from plasma virus von Aralaguppe, Shambhu G., Siddik, Abu Bakar, Manickam, Ashokkumar, Ambikan, Anoop T., Kumar, Milner M., Fernandes, Sunjay Jude, Amogne, Wondwossen, Bangaruswamy, Dhinoth K., Hanna, Luke Elizabeth, Sonnerborg, Anders, Neogi, Ujjwal

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