RNA‐seq analyses of Arabidopsis thaliana seedlings after exposure to blue‐light phototropic stimuli in microgravity von Vandenbrink, Joshua P., Herranz, Raul, Poehlman, William L., Alex Feltus, F., Villacampa, Alicia, Ciska, Malgorzata, Javier Medina, F., Kiss, John Z.

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Gene Coexpression Network Alignment and Conservation of Gene Modules between Two Grass Species: Maize and Rice von Ficklin, Stephen P., Feltus, F. Alex

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Laser Capture Microdissection Transcriptome Reveals Spatiotemporal Tissue Gene Expression Patterns of Medicago truncatula Roots Responding to Rhizobia von Schnabel, Elise, Thomas, Jacklyn, El-Hawaz, Rabia, Gao, Yueyao, Poehlman, William L, Chavan, Suchitra, Pasha, Asher, Esteban, Eddi, Provart, Nicholas, Feltus, F Alex, Frugoli, Julia

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EdgeScaping: Mapping the spatial distribution of pairwise gene expression intensities von Husain, Benafsh, Feltus, F Alex

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Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms von Wang, Yupeng, Wang, Xiyin, Tang, Haibao, Tan, Xu, Ficklin, Stephen P, Feltus, F Alex, Paterson, Andrew H

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Simulating the restoration of normal gene expression from different thyroid cancer stages using deep learning von Nelligan, Nicole M, Bender, M Reed, Feltus, F Alex

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A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling von Erdem, Cemal, Mutsuddy, Arnab, Bensman, Ethan M., Dodd, William B., Saint-Antoine, Michael M., Bouhaddou, Mehdi, Blake, Robert C., Gross, Sean M., Heiser, Laura M., Feltus, F. Alex, Birtwistle, Marc R.

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Discovering Condition-Specific Gene Co-Expression Patterns Using Gaussian Mixture Models: A Cancer Case Study von Ficklin, Stephen P., Dunwoodie, Leland J., Poehlman, William L., Watson, Christopher, Roche, Kimberly E., Feltus, F. Alex

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GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure von Hadish, John A, Biggs, Tyler D, Shealy, Benjamin T, Bender, M Reed, McKnight, Coleman B, Wytko, Connor, Smith, Melissa C, Feltus, F Alex, Honaas, Loren, Ficklin, Stephen P

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Linking Binary Gene Relationships to Drivers of Renal Cell Carcinoma Reveals Convergent Function in Alternate Tumor Progression Paths von Poehlman, William L., Hsieh, James J., Feltus, F. Alex

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Large-Scale Gene Relocations following an Ancient Genome Triplication Associated with the Diversification of Core Eudicots von Wang, Yupeng, Ficklin, Stephen P, Wang, Xiyin, Feltus, F Alex, Paterson, Andrew H

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Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development von Rong, J, Feltus, F.A, Waghmare, V.N, Pierce, G.J, Chee, P.W, Draye, X, Saranga, Y, Wright, R.J, Wilkins, T.A, May, O.L

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NetExtractor: Extracting a Cerebellar Tissue Gene Regulatory Network Using Differentially Expressed High Mutual Information Binary RNA Profiles von Husain, Benafsh, Hickman, Allison R., Hang, Yuqing, Shealy, Benjamin T., Sapra, Karan, Feltus, F. Alex

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Cancer cell redirection biomarker discovery using a mutual information approach von Roche, Kimberly, Feltus, F Alex, Park, Jang Pyo, Coissieux, Marie-May, Chang, Chenyan, Chan, Vera B S, Bentires-Alj, Mohamed, Booth, Brian W

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Enrichment of a subset of Neanderthal polymorphisms in autistic probands and siblings von Pauly, Rini, Johnson, Layla, Feltus, F. Alex, Casanova, Emily L.

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GPU Implementation of Pairwise Gaussian Mixture Models for Multi-Modal Gene Co-Expression Networks von Shealy, Benjamin T., Burns, Josh J. R., Smith, Melissa C., Alex Feltus, F., Ficklin, Stephen P.

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Identification of bioconversion quantitative trait loci in the interspecific cross Sorghum bicolor × Sorghum propinquum von Vandenbrink, Joshua P, Goff, Valorie, Jin, Huizhe, Kong, Wenqian, Paterson, Andrew H, Alex Feltus, F

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Construction of physical maps for the sex-specific regions of papaya sex chromosomes von Na, Jong-Kuk, Wang, Jianping, Murray, Jan E, Gschwend, Andrea R, Zhang, Wenli, Yu, Qingyi, Navajas-Pérez, Rafael, Feltus, F Alex, Chen, Cuixia, Kubat, Zdenek, Moore, Paul H, Jiang, Jiming, Paterson, Andrew H, Ming, Ray

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Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules von Spangler, Jacob B, Ficklin, Stephen P, Luo, Feng, Freeling, Michael, Feltus, F Alex

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Moving Just Enough Deep Sequencing Data to Get the Job Done von Mills, Nicholas, Bensman, Ethan M, Poehlman, William L, Ligon, Walter B, Feltus, F Alex

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