The clarifying role of time series data in the population genetics of HIV von Feder, Alison F, Pennings, Pleuni S, Petrov, Dmitri A

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Identifying signatures of selection in genetic time series von Feder, Alison F, Kryazhimskiy, Sergey, Plotkin, Joshua B

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Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV von Theys, Kristof, Feder, Alison F, Gelbart, Maoz, Hartl, Marion, Stern, Adi, Pennings, Pleuni S

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Understanding patterns of HIV multi-drug resistance through models of temporal and spatial drug heterogeneity von Feder, Alison F, Harper, Kristin N, Brumme, Chanson J, Pennings, Pleuni S

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Brain tropism acquisition: The spatial dynamics and evolution of a measles virus collective infectious unit that drove lethal subacute sclerosing panencephalitis von Yousaf, Iris, Hannon, William W, Donohue, Ryan C, Pfaller, Christian K, Yadav, Kalpana, Dikdan, Ryan J, Tyagi, Sanjay, Schroeder, Declan C, Shieh, Wun-Ju, Rota, Paul A, Feder, Alison F, Cattaneo, Roberto

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Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome von Lohmueller, Kirk E, Albrechtsen, Anders, Li, Yingrui, Kim, Su Yeon, Korneliussen, Thorfinn, Vinckenbosch, Nicolas, Tian, Geng, Huerta-Sanchez, Emilia, Feder, Alison F, Grarup, Niels, Jørgensen, Torben, Jiang, Tao, Witte, Daniel R, Sandbæk, Annelli, Hellmann, Ines, Lauritzen, Torsten, Hansen, Torben, Pedersen, Oluf, Wang, Jun, Nielsen, Rasmus

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LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data von Feder, Alison F, Petrov, Dmitri A, Bergland, Alan O

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State-dependent evolutionary models reveal modes of solid tumour growth von Lewinsohn, Maya A., Bedford, Trevor, Müller, Nicola F., Feder, Alison F.

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Correction: Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV von Theys, Kristof, Feder, Alison F, Gelbart, Maoz, Hartl, Marion, Stern, Adi, Pennings, Pleuni S

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More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1 von Feder, Alison F, Rhee, Soo-Yon, Holmes, Susan P, Shafer, Robert W, Petrov, Dmitri A, Pennings, Pleuni S

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Evolutionary Dynamics in Structured Populations Under Strong Population Genetic Forces von Feder, Alison F, Pennings, Pleuni S, Hermisson, Joachim, Petrov, Dmitri A

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A spatio-temporal assessment of simian/human immunodeficiency virus (SHIV) evolution reveals a highly dynamic process within the host von Feder, Alison F, Kline, Christopher, Polacino, Patricia, Cottrell, Mackenzie, Kashuba, Angela D M, Keele, Brandon F, Hu, Shiu-Lok, Petrov, Dmitri A, Pennings, Pleuni S, Ambrose, Zandrea

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Elevated HIV Viral Load is Associated with Higher Recombination Rate In Vivo von Romero, Elena V, Feder, Alison F

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The Relationship Between Haplotype-Based FST and Haplotype Length von Mehta, Rohan S, Feder, Alison F, Boca, Simina M, Rosenberg, Noah A

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The Relationship Between Haplotype-Based F ST and Haplotype Length von Mehta, Rohan S, Feder, Alison F, Boca, Simina M, Rosenberg, Noah A

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The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens von Wilson, Benjamin A., Garud, Nandita R., Feder, Alison F., Assaf, Zoe J., Pennings, Pleuni S.

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Correction: More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1 von Feder, Alison F, Rhee, Soo-Yon, Holmes, Susan P, Shafer, Robert W, Petrov, Dmitri A, Pennings, Pleuni S

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The Relationship Between Haplotype-Based FST and Haplotype Length von Mehta, Rohan S., Feder, Alison F., Boca, Simina M., Rosenberg, Noah A.

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A spatio-temporal assessment of simian/human immunodeficiency virus von Feder, Alison F, Kline, Christopher, Polacino, Patricia, Cottrell, Mackenzie, Kashuba, Angela D. M, Keele, Brandon F, Hu, Shiu-Lok, Petrov, Dmitri A, Pennings, Pleuni S, Ambrose, Zandrea

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The Relationship Between Haplotype-Based FST and Haplotype Length von Mehta, Rohan S, Feder, Alison F, Boca, Simina M, Rosenberg, Noah A

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