Building a minimal and generalizable model of transcription factor–based biosensors: Showcasing flavonoids von Trabelsi, Heykel, Koch, Mathilde, Faulon, Jean‐Loup

Volltext

RetroPath2.0: A retrosynthesis workflow for metabolic engineers von Delépine, Baudoin, Duigou, Thomas, Carbonell, Pablo, Faulon, Jean-Loup

Volltext

Large scale active-learning-guided exploration for in vitro protein production optimization von Borkowski, Olivier, Koch, Mathilde, Zettor, Agnès, Pandi, Amir, Batista, Angelo Cardoso, Soudier, Paul, Faulon, Jean-Loup

Volltext

Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors von Voyvodic, Peter L., Pandi, Amir, Koch, Mathilde, Conejero, Ismael, Valjent, Emmanuel, Courtet, Philippe, Renard, Eric, Faulon, Jean-Loup, Bonnet, Jerome

Volltext

A neural-mechanistic hybrid approach improving the predictive power of genome-scale metabolic models von Faure, Léon, Mollet, Bastien, Liebermeister, Wolfram, Faulon, Jean-Loup

Volltext

RetroRules: a database of reaction rules for engineering biology von Duigou, Thomas, du Lac, Melchior, Carbonell, Pablo, Faulon, Jean-Loup

Volltext

Metabolic perceptrons for neural computing in biological systems von Pandi, Amir, Koch, Mathilde, Voyvodic, Peter L., Soudier, Paul, Bonnet, Jerome, Kushwaha, Manish, Faulon, Jean-Loup

Volltext

A versatile active learning workflow for optimization of genetic and metabolic networks von Pandi, Amir, Diehl, Christoph, Yazdizadeh Kharrazi, Ali, Scholz, Scott A., Bobkova, Elizaveta, Faure, Léon, Nattermann, Maren, Adam, David, Chapin, Nils, Foroughijabbari, Yeganeh, Moritz, Charles, Paczia, Nicole, Cortina, Niña Socorro, Faulon, Jean-Loup, Erb, Tobias J.

Volltext

Microbial Genes for a Circular and Sustainable Bio-PET Economy von Salvador, Manuel, Abdulmutalib, Umar, Gonzalez, Jaime, Kim, Juhyun, Smith, Alex A, Faulon, Jean-Loup, Wei, Ren, Zimmermann, Wolfgang, Jimenez, Jose I

Volltext

XTMS: pathway design in an eXTended metabolic space von Carbonell, Pablo, Parutto, Pierre, Herisson, Joan, Pandit, Shashi Bhushan, Faulon, Jean-Loup

Volltext

The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering von Hérisson, Joan, Duigou, Thomas, du Lac, Melchior, Bazi-Kabbaj, Kenza, Sabeti Azad, Mahnaz, Buldum, Gizem, Telle, Olivier, El Moubayed, Yorgo, Carbonell, Pablo, Swainston, Neil, Zulkower, Valentin, Kushwaha, Manish, Baldwin, Geoff S., Faulon, Jean-Loup

Volltext

Origins of Specificity and Promiscuity in Metabolic Networks von Carbonell, Pablo, Lecointre, Guillaume, Faulon, Jean-Loup

Volltext

Predicting protein–protein interactions using signature products von Martin, Shawn, Roe, Diana, Faulon, Jean-Loup

Volltext

neo4jsbml: import systems biology markup language data into the graph database Neo4j von Gricourt, Guillaume, Duigou, Thomas, Dérozier, Sandra, Faulon, Jean-Loup

Volltext

In silico, in vitro, and in vivo machine learning in synthetic biology and metabolic engineering von Faulon, Jean-Loup, Faure, Léon

Volltext

Genome scale enzyme–metabolite and drug–target interaction predictions using the signature molecular descriptor von Faulon, Jean-Loup, Misra, Milind, Martin, Shawn, Sale, Ken, Sapra, Rajat

Volltext

Reinforcement Learning for Bioretrosynthesis von Koch, Mathilde, Duigou, Thomas, Faulon, Jean-Loup

Volltext

Boolean dynamics of genetic regulatory networks inferred from microarray time series data von Martin, Shawn, Zhang, Zhaoduo, Martino, Anthony, Faulon, Jean-Loup

Volltext

Validation of RetroPath, a computer-aided design tool for metabolic pathway engineering von Fehér, Tamás, Planson, Anne-Gaëlle, Carbonell, Pablo, Fernández-Castané, Alfred, Grigoras, Ioana, Dariy, Ekaterina, Perret, Alain, Faulon, Jean-Loup

Volltext

Systems chemical biology von Faulon, Jean-Loup, Oprea, Tudor I, Tropsha, Alexander, Rintoul, Mark D

Volltext