ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data von Romagnoli, Dario, Boccalini, Giulia, Bonechi, Martina, Biagioni, Chiara, Fassan, Paola, Bertorelli, Roberto, De Sanctis, Veronica, Di Leo, Angelo, Migliaccio, Ilenia, Malorni, Luca, Benelli, Matteo

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YES1 and MYC Amplifications as Synergistic Resistance Mechanisms to Different Generation ALK Tyrosine Kinase Inhibitors in Advanced NSCLC: Brief Report of Clinical and Preclinical... von Minari, Roberta, Valentini, Samuel, Madeddu, Denise, Cavazzoni, Andrea, La Monica, Silvia, Lagrasta, Costanza Anna Maria, Bertorelli, Roberto, De Sanctis, Veronica, Fassan, Paola, Azzoni, Cinzia, Bottarelli, Lorena, Frati, Caterina, Gnetti, Letizia, Facchinetti, Francesco, Petronini, Pier Giorgio, Alfieri, Roberta, Romanel, Alessandro, Tiseo, Marcello

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Additional file 1 of ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data von Romagnoli, Dario, Boccalini, Giulia, Bonechi, Martina, Biagioni, Chiara, Fassan, Paola, Bertorelli, Roberto, Sanctis, Veronica De, Leo, Angelo Di, Migliaccio, Ilenia, Malorni, Luca, Benelli, Matteo

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Targeted next-generation sequencing of cancer genes dissects the molecular profiles of intraductal papillary neoplasms of the pancreas von Amato, Eliana, Molin, Marco dal, Mafficini, Andrea, Yu, Jun, Malleo, Giuseppe, Rusev, Borislav, Fassan, Matteo, Antonello, Davide, Sadakari, Yoshihiko, Castelli, Paola, Zamboni, Giuseppe, Maitra, Anirban, Salvia, Roberto, Hruban, Ralph H, Bassi, Claudio, Capelli, Paola, Lawlor, Rita T, Goggins, Michael, Scarpa, Aldo

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“Stranger things” in the gut: uncommon items in gastrointestinal specimens von Grillo, Federica, Campora, Michela, Carlin, Luca, Cornara, Laura, Parente, Paola, Vanoli, Alessandro, Remo, Andrea, Migliora, Paola, Roberto, Fiocca, Fassan, Matteo, Mastracci, Luca

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Prediction of Benefit from Checkpoint Inhibitors in Mismatch Repair Deficient Metastatic Colorectal Cancer: Role of Tumor Infiltrating Lymphocytes von Loupakis, Fotios, Depetris, Ilaria, Biason, Paola, Intini, Rossana, Prete, Alessandra Anna, Leone, Francesco, Lombardi, Pasquale, Filippi, Roberto, Spallanzani, Andrea, Cascinu, Stefano, Bonetti, Luca Reggiani, Maddalena, Giulia, Valeri, Nicola, Sottoriva, Andrea, Zapata, Luis, Salmaso, Roberta, Munari, Giada, Rugge, Massimo, Dei Tos, Angelo Paolo, Golovato, Justin, Sanborn, John Z., Nguyen, Andrew, Schirripa, Marta, Zagonel, Vittorina, Lonardi, Sara, Fassan, Matteo

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Early assessment of KRAS mutation in cfDNA correlates with risk of progression and death in advanced non-small-cell lung cancer von Zulato, Elisabetta, Attili, Ilaria, Pavan, Alberto, Nardo, Giorgia, Del Bianco, Paola, Boscolo Bragadin, Andrea, Verza, Martina, Pasqualini, Lorenza, Pasello, Giulia, Fassan, Matteo, Calabrese, Fiorella, Guarneri, Valentina, Amadori, Alberto, Conte, PierFranco, Indraccolo, Stefano, Bonanno, Laura

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Genetic, Epigenetic, and Immunologic Profiling of MMR-Deficient Relapsed Glioblastoma von Indraccolo, Stefano, Lombardi, Giuseppe, Fassan, Matteo, Pasqualini, Lorenza, Giunco, Silvia, Marcato, Raffaella, Gasparini, Alessandra, Candiotto, Cinzia, Nalio, Silvia, Fiduccia, Pasquale, Fanelli, Giuseppe Nicolò, Pambuku, Ardi, Della Puppa, Alessandro, D'Avella, Domenico, Bonaldi, Laura, Gardiman, Marina Paola, Bertorelle, Roberta, De Rossi, Anita, Zagonel, Vittorina

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miR-27a is a master regulator of metabolic reprogramming and chemoresistance in colorectal cancer von Barisciano, Giovannina, Colangelo, Tommaso, Rosato, Valeria, Muccillo, Livio, Taddei, Maria Letizia, Ippolito, Luigi, Chiarugi, Paola, Galgani, Mario, Bruzzaniti, Sara, Matarese, Giuseppe, Fassan, Matteo, Agostini, Marco, Bergamo, Francesca, Pucciarelli, Salvatore, Carbone, Annalucia, Mazzoccoli, Gianluigi, Colantuoni, Vittorio, Bianchi, Fabrizio, Sabatino, Lina

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The heterogeneous clinical and pathological landscapes of metastatic Braf-mutated colorectal cancer von Fanelli, Giuseppe Nicolo, Dal Pozzo, Carlo Alberto, Depetris, Ilaria, Schirripa, Marta, Brignola, Stefano, Biason, Paola, Balistreri, Mariangela, Dal Santo, Luca, Lonardi, Sara, Munari, Giada, Loupakis, Fotios, Fassan, Matteo

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Cholangiocarcinoma Heterogeneity Revealed by Multigene Mutational Profiling: Clinical and Prognostic Relevance in Surgically Resected Patients von Ruzzenente, Andrea, Fassan, Matteo, Conci, Simone, Simbolo, Michele, Lawlor, Rita T., Pedrazzani, Corrado, Capelli, Paola, D’Onofrio, Mirko, Iacono, Calogero, Scarpa, Aldo, Guglielmi, Alfredo

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Gut inflammation and tumorigenesis: every site has a different tale to tell von Vanoli, Alessandro, Parente, Paola, Fassan, Matteo, Mastracci, Luca, Grillo, Federica

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Molecular Landscapes of Gastric Pre-Neoplastic and Pre-Invasive Lesions von Businello, Gianluca, Angerilli, Valentina, Parente, Paola, Realdon, Stefano, Savarino, Edoardo, Farinati, Fabio, Grillo, Federica, Vanoli, Alessandro, Galuppini, Francesca, Paccagnella, Silvia, Pennelli, Gianmaria, Mastracci, Luca, Saragoni, Luca, Fassan, Matteo

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Whole-genome landscape of pancreatic neuroendocrine tumours von Scarpa, Aldo, Chang, David K., Nones, Katia, Corbo, Vincenzo, Patch, Ann-Marie, Bailey, Peter, Lawlor, Rita T., Johns, Amber L., Miller, David K., Mafficini, Andrea, Rusev, Borislav, Scardoni, Maria, Antonello, Davide, Barbi, Stefano, Sikora, Katarzyna O., Cingarlini, Sara, Vicentini, Caterina, McKay, Skye, Quinn, Michael C. J., Bruxner, Timothy J. C., Christ, Angelika N., Harliwong, Ivon, Idrisoglu, Senel, McLean, Suzanne, Nourse, Craig, Nourbakhsh, Ehsan, Wilson, Peter J., Anderson, Matthew J., Fink, J. Lynn, Newell, Felicity, Waddell, Nick, Holmes, Oliver, Kazakoff, Stephen H., Leonard, Conrad, Wood, Scott, Xu, Qinying, Nagaraj, Shivashankar Hiriyur, Amato, Eliana, Dalai, Irene, Bersani, Samantha, Cataldo, Ivana, Dei Tos, Angelo P., Capelli, Paola, Davì, Maria Vittoria, Landoni, Luca, Malpaga, Anna, Miotto, Marco, Whitehall, Vicki L. J., Leggett, Barbara A., Harris, Janelle L., Harris, Jonathan, Jones, Marc D., Humphris, Jeremy, Chantrill, Lorraine A., Chin, Venessa, Nagrial, Adnan M., Pajic, Marina, Scarlett, Christopher J., Rooman, Ilse, Toon, Christopher, Wu, Jianmin, Pinese, Mark, Barbour, Andrew, Mawson, Amanda, Humphrey, Emily S., Colvin, Emily K., Chou, Angela, Lovell, Jessica A., Jamieson, Nigel B., Duthie, Fraser, Gingras, Marie-Claude, Fisher, William E., Dagg, Rebecca A., Lau, Loretta M. S., Lee, Michael, Pickett, Hilda A., Reddel, Roger R., Samra, Jaswinder S., Merrett, Neil D., Epari, Krishna, Nguyen, Nam Q., Zeps, Nikolajs, Falconi, Massimo, Simbolo, Michele, Butturini, Giovanni, Van Buren, George, Partelli, Stefano, Fassan, Matteo, Khanna, Kum Kum, Gill, Anthony J., Wheeler, David A., Gibbs, Richard A., Musgrove, Elizabeth A., Bassi, Claudio, Tortora, Giampaolo, Pederzoli, Paolo, Pearson, John V., Waddell, Nicola, Biankin, Andrew V., Grimmond, Sean M.

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Genetic alterations analysis in prognostic stratified groups identified TP53 and ARID1A as poor clinical performance markers in intrahepatic cholangiocarcinoma von Simbolo, Michele, Vicentini, Caterina, Ruzzenente, Andrea, Brunelli, Matteo, Conci, Simone, Fassan, Matteo, Mafficini, Andrea, Rusev, Borislav, Corbo, Vincenzo, Capelli, Paola, Bria, Emilio, Pedron, Serena, Turri, Giona, Lawlor, Rita T., Tortora, Giampaolo, Bassi, Claudio, Guglielmi, Alfredo, Scarpa, Aldo

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MicroRNA expression profiling in human Barrett's carcinogenesis von Fassan, Matteo, Volinia, Stefano, Palatini, Jeff, Pizzi, Marco, Baffa, Raffaele, De Bernard, Marina, Battaglia, Giorgio, Parente, Paola, Croce, Carlo M., Zaninotto, Giovanni, Ancona, Ermanno, Rugge, Massimo

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Very early onset inflammatory bowel diseases: Is it the time to share and define a histopathological reporting scheme? von Parente, Paola, Vanoli, Alessandro, Fassan, Matteo, Mastracci, Luca, Grillo, Federica

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Cholangiocarcinoma von Sarcognato, Samantha, Sacchi, Diana, Fassan, Matteo, Fabris, Luca, Cadamuro, Massimiliano, Zanus, Giacomo, Cataldo, Ivana, Capelli, Paola, Baciorri, Francesca, Cacciatore, Matilde, Guido, Maria

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Silencing of miR-182 is associated with modulation of tumorigenesis through apoptosis induction in an experimental model of colorectal cancer von Perilli, Lisa, Tessarollo, Sofia, Albertoni, Laura, Curtarello, Matteo, Pastò, Anna, Brunetti, Efrem, Fassan, Matteo, Rugge, Massimo, Indraccolo, Stefano, Amadori, Alberto, Bortoluzzi, Stefania, Zanovello, Paola

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Molecular profiling of appendiceal serrated lesions, polyps and mucinous neoplasms: a single-centre experience von Munari, Giada, Businello, Gianluca, Mattiolo, Paola, Pennelli, Gianmaria, Sbaraglia, Marta, Borga, Chiara, Pucciarelli, Salvatore, Spolverato, Gaya, Mescoli, Claudia, Galuppini, Francesca, Sommariva, Antonio, Bellan, Elena, Lonardi, Sara, Loupakis, Fotios, Luchini, Claudio, Dei Tos, Angelo Paolo, Fassan, Matteo

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