Insights from genomic profiling of transcription factors von Farnham, Peggy J

Volltext

Cross-talk between Site-specific Transcription Factors and DNA Methylation States von Blattler, Adam, Farnham, Peggy J.

Volltext

Genome-wide analysis of HOXC4 and HOXC6 regulated genes and binding sites in prostate cancer cells von Luo, Zhifei, Farnham, Peggy J.

Volltext

A high-resolution 3D epigenomic map reveals insights into the creation of the prostate cancer transcriptome von Rhie, Suhn Kyong, Perez, Andrew A., Lay, Fides D., Schreiner, Shannon, Shi, Jiani, Polin, Jenevieve, Farnham, Peggy J.

Volltext

Comprehensive functional annotation of 77 prostate cancer risk loci von Hazelett, Dennis J, Rhie, Suhn Kyong, Gaddis, Malaina, Yan, Chunli, Lakeland, Daniel L, Coetzee, Simon G, Henderson, Brian E, Noushmehr, Houtan, Cozen, Wendy, Kote-Jarai, Zsofia, Eeles, Rosalind A, Easton, Douglas F, Haiman, Christopher A, Lu, Wange, Farnham, Peggy J, Coetzee, Gerhard A

Volltext

Characterization of the ZFX family of transcription factors that bind downstream of the start site of CpG island promoters von Ni, Weiya, Perez, Andrew A, Schreiner, Shannon, Nicolet, Charles M, Farnham, Peggy J

Volltext

Functional annotation of colon cancer risk SNPs von Yao, Lijing, Tak, Yu Gyoung, Berman, Benjamin P., Farnham, Peggy J.

Volltext

TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma von Mullen, Daniel J., Yan, Chunli, Kang, Diane S., Zhou, Beiyun, Borok, Zea, Marconett, Crystal N., Farnham, Peggy J., Offringa, Ite A., Rhie, Suhn Kyong

Volltext

Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability von de Mendoza, Alex, Nguyen, Trung Viet, Ford, Ethan, Poppe, Daniel, Buckberry, Sam, Pflueger, Jahnvi, Grimmer, Matthew R., Stolzenburg, Sabine, Bogdanovic, Ozren, Oshlack, Alicia, Farnham, Peggy J., Blancafort, Pilar, Lister, Ryan

Volltext

Defining functional DNA elements in the human genome von Kellis, Manolis, Wold, Barbara, Snyderd, Michael P., Bernstein, Bradley E., Kundaje, Anshul, Marinov, Georgi K., Ward, Lucas D., Birney, Ewan, Crawford, Gregory E., Dekker, Job, Dunham, Ian, Elnitski, Laura L., Farnham, Peggy J., Feingold, Elise A., Gerstein, Mark, Giddings, Morgan C., Gilbert, David M., Gingeras, Thomas R., Green, Eric D., Guigo, Roderic, Hubbard, Tim, Kent, Jim, Lieb, Jason D., Myerst, Richard M., Pazin, Michael J., Ren, Bing, Stamatoyannopoulos, John A., Weng, Zhiping, White, Kevin P., Hardison, Ross C.

Volltext

Reduction of ZFX levels decreases histone H4 acetylation and increases Pol2 pausing at target promoters von Hsu, Emily, Hutchison, Katherine, Liu, Yao, Nicolet, Charles M, Schreiner, Shannon, Zemke, Nathan R, Farnham, Peggy J

Volltext

Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs von Rinn, John L., Kertesz, Michael, Wang, Jordon K., Squazzo, Sharon L., Xu, Xiao, Brugmann, Samantha A., Goodnough, L. Henry, Helms, Jill A., Farnham, Peggy J., Segal, Eran, Chang, Howard Y.

Volltext

A Prostate Cancer Risk Element Functions as a Repressive Loop that Regulates HOXA13 von Luo, Zhifei, Rhie, Suhn Kyong, Lay, Fides D., Farnham, Peggy J.

Volltext

CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops von Guo, Yu, Perez, Andrew A, Hazelett, Dennis J, Coetzee, Gerhard A, Rhie, Suhn Kyong, Farnham, Peggy J

Volltext

ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes von Frietze, Seth, O'Geen, Henriette, Blahnik, Kimberly R, Jin, Victor X, Farnham, Peggy J

Volltext

Using ChIP-Seq Technology to Generate High-Resolution Profiles of Histone Modifications von O’Geen, Henriette, Echipare, Lorigail, Farnham, Peggy J.

Volltext

L3MBTL2 Protein Acts in Concert with PcG Protein-Mediated Monoubiquitination of H2A to Establish a Repressive Chromatin Structure von Trojer, Patrick, Cao, Alina R., Gao, Zhonghua, Li, Yan, Zhang, Jin, Xu, Xiaoqin, Li, Guohong, Losson, Regine, Erdjument-Bromage, Hediye, Tempst, Paul, Farnham, Peggy J., Reinberg, Danny

Volltext

Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy von Fujiwara, Tohru, O'Geen, Henriette, Keles, Sunduz, Blahnik, Kimberly, Linnemann, Amelia K., Kang, Yoon-A., Choi, Kyunghee, Farnham, Peggy J., Bresnick, Emery H.

Volltext

The role of DNA methylation in directing the functional organization of the cancer epigenome von Lay, Fides D, Liu, Yaping, Kelly, Theresa K, Witt, Heather, Farnham, Peggy J, Jones, Peter A, Berman, Benjamin P

Volltext

Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes von Yasui, Dag H, Peddada, Sailaja, Bieda, Mark C, Vallero, Roxanne O, Hogart, Amber, Nagarajan, Raman P, Thatcher, Karen N, Farnham, Peggy J, LaSalle, Janine M

Volltext