C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution von Kouno, Tsukasa, Moody, Jonathan, Kwon, Andrew Tae-Jun, Shibayama, Youtaro, Kato, Sachi, Huang, Yi, Böttcher, Michael, Motakis, Efthymios, Mendez, Mickaël, Severin, Jessica, Luginbühl, Joachim, Abugessaisa, Imad, Hasegawa, Akira, Takizawa, Satoshi, Arakawa, Takahiro, Furuno, Masaaki, Ramalingam, Naveen, West, Jay, Suzuki, Harukazu, Kasukawa, Takeya, Lassmann, Timo, Hon, Chung-Chau, Arner, Erik, Carninci, Piero, Plessy, Charles, Shin, Jay W.

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Global analysis of pre-mRNA subcellular localization following splicing inhibition by spliceostatin A von Yoshimoto, Rei, Kaida, Daisuke, Furuno, Masaaki, Burroughs, A Maxwell, Noma, Shohei, Suzuki, Harukazu, Kawamura, Yumi, Hayashizaki, Yoshihide, Mayeda, Akila, Yoshida, Minoru

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xcore: an R package for inference of gene expression regulators von Migdał, Maciej, Arakawa, Takahiro, Takizawa, Satoshi, Furuno, Masaaki, Suzuki, Harukazu, Arner, Erik, Winata, Cecilia Lanny, Kaczkowski, Bogumił

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Whole exome analysis identifies frequent CNGA1 mutations in Japanese population with autosomal recessive retinitis pigmentosa von Katagiri, Satoshi, Akahori, Masakazu, Sergeev, Yuri, Yoshitake, Kazutoshi, Ikeo, Kazuho, Furuno, Masaaki, Hayashi, Takaaki, Kondo, Mineo, Ueno, Shinji, Tsunoda, Kazushige, Shinoda, Kei, Kuniyoshi, Kazuki, Tsurusaki, Yohinori, Matsumoto, Naomichi, Tsuneoka, Hiroshi, Iwata, Takeshi

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Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome von Ravasi, Timothy, Suzuki, Harukazu, Pang, Ken C, Katayama, Shintaro, Furuno, Masaaki, Okunishi, Rie, Fukuda, Shiro, Ru, Kelin, Frith, Martin C, Gongora, M Milena, Grimmond, Sean M, Hume, David A, Hayashizaki, Yoshihide, Mattick, John S

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CCT2 Mutations Evoke Leber Congenital Amaurosis due to Chaperone Complex Instability von Minegishi, Yuriko, Sheng, XunLun, Yoshitake, Kazutoshi, Sergeev, Yuri, Iejima, Daisuke, Shibagaki, Yoshio, Monma, Norikazu, Ikeo, Kazuho, Furuno, Masaaki, Zhuang, Wenjun, Liu, Yani, Rong, Weining, Hattori, Seisuke, Iwata, Takeshi

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Ecological Characteristics of Plants Invading/Colonizing Street Tree Bases von FURUNO, Masaaki, UCHIDA, Taizo, Huan, Xue Jun, HAYASAKA, Daisuke, ARASE, Teruo

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Clusters of internally primed transcripts reveal novel long noncoding RNAs von Furuno, Masaaki, Pang, Ken C, Ninomiya, Noriko, Fukuda, Shiro, Frith, Martin C, Bult, Carol, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Mattick, John S, Suzuki, Harukazu

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A framework for identification of on- and off-target transcriptional responses to drug treatment von Huang, Yi, Furuno, Masaaki, Arakawa, Takahiro, Takizawa, Satoshi, de Hoon, Michiel, Suzuki, Harukazu, Arner, Erik

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RHO Mutations (p.W126L and p.A346P) in Two Japanese Families with Autosomal Dominant Retinitis Pigmentosa von Tsuneoka, Hiroshi, Iwata, Takeshi, Okada, Tetsuji, Furuno, Masaaki, Yoshitake, Kazutoshi, Nishino, Jo, Itabashi, Takeshi, Akahori, Masakazu, Hayashi, Takaaki, Katagiri, Satoshi, Ikeo, Kazuho

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Discrimination of Non-Protein-Coding Transcripts from Protein-Coding mRNA von Frith, Martin C., Bailey, Timothy L., Kasukawa, Takeya, Mignone, Flavio, Kummerfeld, Sarah K., Madera, Martin, Sunkara, Sirisha, Furuno, Masaaki, Bult, Carol J., Quackenbush, John, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Pesole, Graziano, Mattick, John S.

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CDS annotation in full-length cDNA sequence von Furuno, Masaaki, Kasukawa, Takeya, Saito, Rintaro, Adachi, Jun, Suzuki, Harukazu, Baldarelli, Richard, Hayashizaki, Yoshihide, Okazaki, Yasushi

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CD157 Marks Tissue-Resident Endothelial Stem Cells with Homeostatic and Regenerative Properties von Wakabayashi, Taku, Naito, Hisamichi, Suehiro, Jun-ichi, Lin, Yang, Kawaji, Hideya, Iba, Tomohiro, Kouno, Tsukasa, Ishikawa-Kato, Sachi, Furuno, Masaaki, Takara, Kazuhiro, Muramatsu, Fumitaka, Weizhen, Jia, Kidoya, Hiroyasu, Ishihara, Katsuhiko, Hayashizaki, Yoshihide, Nishida, Kohji, Yoder, Mervin C., Takakura, Nobuyuki

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Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor‐1 von Tsuiji, Hitomi, Yoshimoto, Rei, Hasegawa, Yuko, Furuno, Masaaki, Yoshida, Minoru, Nakagawa, Shinichi

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Obtaining locality-certified seeds and seedlings through collaboration with the local communities von FURUNO, Masaaki, NAKAMURA, Hanako, UCHIDA, Taizo

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Spliceostatin A interaction with SF3B limits U1 snRNP availability and causes premature cleavage and polyadenylation von Yoshimoto, Rei, Chhipi-Shrestha, Jagat K., Schneider-Poetsch, Tilman, Furuno, Masaaki, Burroughs, A. Maxwell, Noma, Shohei, Suzuki, Harukazu, Hayashizaki, Yoshihide, Mayeda, Akila, Nakagawa, Shinichi, Kaida, Daisuke, Iwasaki, Shintaro, Yoshida, Minoru

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Development of p53 knockout U87MG cell line for unbiased drug delivery testing system using CRISPR-Cas9 and transcriptomic analysis von Kwon, Andrew Tae-Jun, Mohri, Kohta, Takizawa, Satoshi, Arakawa, Takahiro, Takahashi, Maiko, Kaczkowski, Bogumil, Furuno, Masaaki, Suzuki, Harukazu, Tagami, Shunsuke, Mukai, Hidefumi, Arner, Erik

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Multifunctionality of green roof: improving urban biodiversity by capturing seeds from surrounding area von FURUNO, Masaaki, YOKOYAMA, Haruna, HAYASAKA, Daisuke, UCHIDA, Taizo

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Development and evaluation of an automated annotation pipeline and cDNA annotation system von Kasukawa, Takeya, Furuno, Masaaki, Nikaido, Itoshi, Bono, Hidemasa, Hume, David A, Bult, Carol, Hill, David P, Baldarelli, Richard, Gough, Julian, Kanapin, Alexander, Matsuda, Hideo, Schriml, Lynn M, Hayashizaki, Yoshihide, Okazaki, Yasushi, Quackenbush, John

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The ASO grassland-restoration project, to maintain and restore the ASO semi-natural grassland ―Ecological Revegetation Study Group, JSRT. von UCHIDA, Taizo, IMANISHI, Junichi, IRIYAMA, Yoshihisa, ONO, Sachina, TACHIBANA, Ryuichi, TANAKA, Jun, TSUDA, Sonoko, NAKASHIMA, Atsushi, NAKAMURA, Hanako, FURUNO, Masaaki, YOSHIHARA, Takatsugu

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