Significant non-existence of sequences in genomes and proteomes von Koulouras, Grigorios, Frith, Martin C

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Adaptive seeds tame genomic sequence comparison von Kiełbasa, Szymon M, Wan, Raymond, Sato, Kengo, Horton, Paul, Frith, Martin C

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Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads von Mitsuhashi, Satomi, Frith, Martin C, Mizuguchi, Takeshi, Miyatake, Satoko, Toyota, Tomoko, Adachi, Hiroaki, Oma, Yoko, Kino, Yoshihiro, Mitsuhashi, Hiroaki, Matsumoto, Naomichi

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Improved DNA-Versus-Protein Homology Search for Protein Fossils von Yao, Yin, Frith, Martin C.

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Parameters for accurate genome alignment von Frith, Martin C, Hamada, Michiaki, Horton, Paul

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A survey of localized sequence rearrangements in human DNA von Frith, Martin C, Khan, Sofia

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A pipeline for complete characterization of complex germline rearrangements from long DNA reads von Mitsuhashi, Satomi, Ohori, Sachiko, Katoh, Kazutaka, Frith, Martin C, Matsumoto, Naomichi

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Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells von Mitsuhashi, Satomi, Nakagawa, So, Sasaki-Honda, Mitsuru, Sakurai, Hidetoshi, Frith, Martin C, Mitsuhashi, Hiroaki

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Targeted nanopore sequencing using the Flongle device to identify mitochondrial DNA variants von Akamatsu, Shintaro, Mitsuhashi, Satomi, Soga, Kaima, Mizukami, Heisuke, Shiraishi, Makoto, Frith, Martin C, Yamano, Yoshihisa

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Inferring transcription factor complexes from ChIP-seq data von Whitington, Tom, Frith, Martin C, Johnson, James, Bailey, Timothy L

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Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population von Mitsuhashi, Satomi, Frith, Martin C, Matsumoto, Naomichi

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Long-read sequencing identifies the pathogenic nucleotide repeat expansion in RFC1 in a Japanese case of CANVAS von Nakamura, Haruko, Doi, Hiroshi, Mitsuhashi, Satomi, Miyatake, Satoko, Katoh, Kazutaka, Frith, Martin C, Asano, Tetsuya, Kudo, Yosuke, Ikeda, Takuya, Kubota, Shun, Kunii, Misako, Kitazawa, Yu, Tada, Mikiko, Okamoto, Mitsuo, Joki, Hideto, Takeuchi, Hideyuki, Matsumoto, Naomichi, Tanaka, Fumiaki

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Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy von Mitsuhashi, Satomi, Nakagawa, So, Takahashi Ueda, Mahoko, Imanishi, Tadashi, Frith, Martin C., Mitsuhashi, Hiroaki

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Evaluation and application of RNA-Seq by MinION von Seki, Masahide, Katsumata, Eri, Suzuki, Ayako, Sereewattanawoot, Sarun, Sakamoto, Yoshitaka, Mizushima-Sugano, Junko, Sugano, Sumio, Kohno, Takashi, Frith, Martin C, Tsuchihara, Katsuya, Suzuki, Yutaka

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Discovering sequence motifs with arbitrary insertions and deletions von Frith, Martin C, Saunders, Neil F W, Kobe, Bostjan, Bailey, Timothy L

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Gentle masking of low-complexity sequences improves homology search von Frith, Martin C

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A code for transcription initiation in mammalian genomes von Frith, Martin C, Valen, Eivind, Krogh, Anders, Hayashizaki, Yoshihide, Carninci, Piero, Sandelin, Albin

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Improved search heuristics find 20,000 new alignments between human and mouse genomes von Frith, Martin C, Noé, Laurent

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A mostly traditional approach improves alignment of bisulfite-converted DNA von Frith, Martin C, Mori, Ryota, Asai, Kiyoshi

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Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer von Suzuki, Ayako, Suzuki, Mizuto, Mizushima-Sugano, Junko, Frith, Martin C, Makalowski, Wojciech, Kohno, Takashi, Sugano, Sumio, Tsuchihara, Katsuya, Suzuki, Yutaka

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