Frequency and patterns of ribonucleotide incorporation around autonomously replicating sequences in yeast reveal the division of labor of replicative DNA polymerases von Xu, Penghao, Storici, Francesca

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Mapping ribonucleotides embedded in genomic DNA to single-nucleotide resolution using Ribose-Map von Gombolay, Alli L., Storici, Francesca

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Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair von Mazina, Olga M., Keskin, Havva, Hanamshet, Kritika, Storici, Francesca, Mazin, Alexander V.

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The Smc5/6 complex regulates the yeast Mph1 helicase at RNA-DNA hybrid-mediated DNA damage von Lafuente-Barquero, Juan, Luke-Glaser, Sarah, Graf, Marco, Silva, Sonia, Gómez-González, Belén, Lockhart, Arianna, Lisby, Michael, Aguilera, Andrés, Luke, Brian

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From “Cellular” RNA to “Smart” RNA: Multiple Roles of RNA in Genome Stability and Beyond von Michelini, Flavia, Jalihal, Ameya P, Francia, Sofia, Meers, Chance, Neeb, Zachary T, Rossiello, Francesca, Gioia, Ubaldo, Aguado, Julio, Jones-Weinert, Corey, Luke, Brian, Biamonti, Giuseppe, Nowacki, Mariusz, Storici, Francesca, Carninci, Piero, Walter, Nils G, d’Adda di Fagagna, Fabrizio

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Ribonucleotide incorporation in yeast genomic DNA shows preference for cytosine and guanosine preceded by deoxyadenosine von Balachander, Sathya, Gombolay, Alli L., Yang, Taehwan, Xu, Penghao, Newnam, Gary, Keskin, Havva, El-Sayed, Waleed M. M., Bryksin, Anton V., Tao, Sijia, Bowen, Nicole E., Schinazi, Raymond F., Kim, Baek, Koh, Kyung Duk, Vannberg, Fredrik O., Storici, Francesca

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RNA-mediated double-strand break repair by end-joining mechanisms von Jeon, Youngkyu, Lu, Yilin, Ferrari, Margherita Maria, Channagiri, Tejasvi, Xu, Penghao, Meers, Chance, Zhang, Yiqi, Balachander, Sathya, Park, Vivian S., Marsili, Stefania, Pursell, Zachary F., Jonoska, Nataša, Storici, Francesca

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Ribose-Map: a bioinformatics toolkit to map ribonucleotides embedded in genomic DNA von Gombolay, Alli L, Vannberg, Fredrik O, Storici, Francesca

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Gene Co-Expression Analysis of Human RNASEH2A Reveals Functional Networks Associated with DNA Replication, DNA Damage Response, and Cell Cycle Regulation von Marsili, Stefania, Tichon, Ailone, Kundnani, Deepali, Storici, Francesca

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A mechanism of gene amplification driven by small DNA fragments von Mukherjee, Kuntal, Storici, Francesca

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Mispaired rNMPs in DNA are mutagenic and are targets of mismatch repair and RNases H von Shen, Ying, Koh, Kyung Duk, Weiss, Bernard, Storici, Francesca

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RNA intrusions change DNA elastic properties and structure von Chiu, Hsiang-Chih, Koh, Kyung Duk, Evich, Marina, Lesiak, Annie L, Germann, Markus W, Bongiorno, Angelo, Riedo, Elisa, Storici, Francesca

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To nick or not to nick: comparison of I-SceI single- and double-strand break-induced recombination in yeast and human cells von Katz, Samantha S, Gimble, Frederick S, Storici, Francesca

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Structural Impact of Single Ribonucleotide Residues in DNA von Evich, Marina, Spring-Connell, Alexander M., Storici, Francesca, Germann, Markus W.

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Hypermutability of damaged single-strand DNA formed at double-strand breaks and uncapped telomeres in yeast Saccharomyces cerevisiae von Yang, Yong, Sterling, Joan, Storici, Francesca, Resnick, Michael A, Gordenin, Dmitry A

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Distinct features of ribonucleotides within genomic DNA in Aicardi-Goutières syndrome ortholog mutants of Saccharomyces cerevisiae von Kundnani, Deepali L., Yang, Taehwan, Gombolay, Alli L., Mukherjee, Kuntal, Newnam, Gary, Meers, Chance, Verma, Ishika, Chhatlani, Kirti, Mehta, Zeel H., Mouawad, Celine, Storici, Francesca

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RESCOT: Restriction enzyme set and combination optimization tools for rNMP capture techniques von Xu, Penghao, Storici, Francesca

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In vivo site-directed mutagenesis using oligonucleotides von Storici, Francesca, Lewis, L. Kevin, Resnick, Michael A.

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Differential Transactivation by the p53 Transcription Factor Is Highly Dependent on p53 Level and Promoter Target Sequence von Inga, Alberto, Storici, Francesca, Darden, Thomas A., Resnick, Michael A.

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Chromosomal site-specific double-strand breaks are efficiently targeted for repair by oligonucleotides in yeast von Storici, F, Durham, C.L, Gordenin, D.A, Resnick, M.A

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