Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection von Pai, Athma A, Baharian, Golshid, Pagé Sabourin, Ariane, Brinkworth, Jessica F, Nédélec, Yohann, Foley, Joseph W, Grenier, Jean-Christophe, Siddle, Katherine J, Dumaine, Anne, Yotova, Vania, Johnson, Zachary P, Lanford, Robert E, Burge, Christopher B, Barreiro, Luis B

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Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines von Foley, Joseph W, Sidow, Arend

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Gene expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ von Foley, Joseph W, Zhu, Chunfang, Jolivet, Philippe, Zhu, Shirley X, Lu, Peipei, Meaney, Michael J, West, Robert B

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Issues on the initial impact of CEFR in Thailand and the region von Foley, Joseph

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Monolithic Chip for High-throughput Blood Cell Depletion to Sort Rare Circulating Tumor Cells von Fachin, Fabio, Spuhler, Philipp, Martel-Foley, Joseph M., Edd, Jon F., Barber, Thomas A., Walsh, John, Karabacak, Murat, Pai, Vincent, Yu, Melissa, Smith, Kyle, Hwang, Henry, Yang, Jennifer, Shah, Sahil, Yarmush, Ruby, Sequist, Lecia V., Stott, Shannon L., Maheswaran, Shyamala, Haber, Daniel A., Kapur, Ravi, Toner, Mehmet

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The latency-associated transcript locus of herpes simplex virus 1 is a virulence determinant in human skin von Vanni, Emilia A. H., Foley, Joseph W., Davison, Andrew J., Sommer, Marvin, Liu, Dongmei, Sung, Phillip, Moffat, Jennifer, Zerboni, Leigh, Arvin, Ann M.

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A plant effector‐triggered immunity signaling sector is inhibited by pattern‐triggered immunity von Hatsugai, Noriyuki, Igarashi, Daisuke, Mase, Keisuke, Lu, You, Tsuda, Yayoi, Chakravarthy, Suma, Wei, Hai‐Lei, Foley, Joseph W, Collmer, Alan, Glazebrook, Jane, Katagiri, Fumiaki

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Use of the manufacturing system design decomposition for comparative analysis and effective design of production systems von Cochran, David S., Foley, Joseph T., Bi, Zhuming

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Monoacidic Inhibitors of the Kelch-like ECH-Associated Protein 1: Nuclear Factor Erythroid 2‑Related Factor 2 (KEAP1:NRF2) Protein–Protein Interaction with High Cell Potency Identi... von Davies, Thomas G, Wixted, William E, Coyle, Joseph E, Griffiths-Jones, Charlotte, Hearn, Keisha, McMenamin, Rachel, Norton, David, Rich, Sharna J, Richardson, Caroline, Saxty, Gordon, Willems, Henriëtte M. G, Woolford, Alison J.-A, Cottom, Joshua E, Kou, Jen-Pyng, Yonchuk, John G, Feldser, Heidi G, Sanchez, Yolanda, Foley, Joseph P, Bolognese, Brian J, Logan, Gregory, Podolin, Patricia L, Yan, Hongxing, Callahan, James F, Heightman, Tom D, Kerns, Jeffrey K

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3'-end sequencing for expression quantification (3SEQ) from archival tumor samples von Beck, Andrew H, Weng, Ziming, Witten, Daniela M, Zhu, Shirley, Foley, Joseph W, Lacroute, Phil, Smith, Cheryl L, Tibshirani, Robert, van de Rijn, Matt, Sidow, Arend, West, Robert B

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S-nitrosylation of surfactant protein-D controls inflammatory function von Guo, Chang-Jiang, Atochina-Vasserman, Elena N, Abramova, Elena, Foley, Joseph P, Zaman, Aisha, Crouch, Erika, Beers, Michael F, Savani, Rashmin C, Gow, Andrew J

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HEB associates with PRC2 and SMAD2/3 to regulate developmental fates von Yoon, Se-Jin, Foley, Joseph W., Baker, Julie C.

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Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers von Brunner, Alayne L, Beck, Andrew H, Edris, Badreddin, Sweeney, Robert T, Zhu, Shirley X, Li, Rui, Montgomery, Kelli, Varma, Sushama, Gilks, Thea, Guo, Xiangqian, Foley, Joseph W, Witten, Daniela M, Giacomini, Craig P, Flynn, Ryan A, Pollack, Jonathan R, Tibshirani, Robert, Chang, Howard Y, van de Rijn, Matt, West, Robert B

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Preexisting Immunity and Low Expression in Primates Highlight Translational Challenges for Liver-directed AAV8-mediated Gene Therapy von Hurlbut, Gregory D, Ziegler, Robin J, Nietupski, Jennifer B, Foley, Joseph W, Woodworth, Lisa A, Meyers, Elizabeth, Bercury, Scott D, Pande, Nilesh N, Souza, David W, Bree, Mark P, Lukason, Michael J, Marshall, John, Cheng, Seng H, Scheule, Ronald K

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Rapid Isolation and Concentration of Pathogenic Fungi Using Inertial Focusing on a Chip-Based Platform von Fuchs, Beth Burgwyn, Eatemadpour, Soraya, Martel-Foley, Joseph M, Stott, Shannon, Toner, Mehmet, Mylonakis, Eleftherios

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Design Engineering and Science von Suh, Nam Pyo, Cavique, Miguel, Foley, Joseph Timothy

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Cost-effective DNA methylation profiling by FML-seq von Foley, Joseph W, Zhu, Shirley X, West, Robert B

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Discovery of RXFP2 genetic association in resistant hypertensive men and RXFP2 antagonists for the treatment of resistant hypertension von Zhang, Shan-Shan, Larrabee, Lance, Chang, Andrew H., Desai, Sapna, Sloan, Lisa, Wang, Xin, Wu, Yixuan, Parvez, Nazia, Amaratunga, Karen, Hartman, Allison C., Whitnall, Abby, Mason, Joseph, Barton, Nicholas P., Chu, Audrey Y., Davitte, Jonathan M., Csakai, Adam J., Tibbetts, Caitlin Vestal, Tolbert, Audrey E., O’Keefe, Heather, Polanco, Jessie, Foley, Joseph, Kmett, Casey, Kehler, Jonathan, Kozejova, Gabriela, Wang, Feng, Mayer, Andrew P., Koenig, Patrick, Foletti, Davide, Pitts, Steven J., Schnackenberg, Christine G.

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Transcriptome and genome evolution during HER2-amplified breast neoplasia von Lu, Peipei, Foley, Joseph, Zhu, Chunfang, McNamara, Katherine, Sirinukunwattana, Korsuk, Vennam, Sujay, Varma, Sushama, Fehri, Hamid, Srivastava, Arunima, Zhu, Shirley, Rittscher, Jens, Mallick, Parag, Curtis, Christina, West, Robert

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Toll-like Receptor 2 (TLR2), Transforming Growth Factor-β, Hyaluronan (HA), and Receptor for HA-mediated Motility (RHAMM) Are Required for Surfactant Protein A-stimulated Macrophag... von Foley, Joseph P., Lam, David, Jiang, Hongmei, Liao, Jie, Cheong, Naeun, McDevitt, Theresa M., Zaman, Aisha, Wright, Jo Rae, Savani, Rashmin C.

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