GPR43 mediates microbiota metabolite SCFA regulation of antimicrobial peptide expression in intestinal epithelial cells via activation of mTOR and STAT3 von Zhao, Ye, Chen, Feidi, Wu, Wei, Sun, Mingming, Bilotta, Anthony J, Yao, Suxia, Xiao, Yi, Huang, Xiangsheng, Eaves-Pyles, Tonyia D, Golovko, George, Fofanov, Yuriy, D'Souza, Warren, Zhao, Qihong, Liu, Zhanju, Cong, Yingzi

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Microbiome Interaction Networks and Community Structure From Laboratory-Reared and Field-Collected Aedes aegypti , Aedes albopictus , and Culex quinquefasciatus Mosquito Vectors von Hegde, Shivanand, Khanipov, Kamil, Albayrak, Levent, Golovko, George, Pimenova, Maria, Saldaña, Miguel A, Rojas, Mark M, Hornett, Emily A, Motl, Greg C, Fredregill, Chris L, Dennett, James A, Debboun, Mustapha, Fofanov, Yuriy, Hughes, Grant L

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Comparative transcriptomic analysis of Rickettsia conorii during in vitro infection of human and tick host cells von Narra, Hema P., Sahni, Abha, Alsing, Jessica, Schroeder, Casey L. C., Golovko, George, Nia, Anna M., Fofanov, Yuriy, Khanipov, Kamil, Sahni, Sanjeev K.

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Matrix metalloproteinases cleave membrane-bound PD-L1 on CD90+ (myo-)fibroblasts in Crohn’s disease and regulate Th1/Th17 cell responses von Aguirre, Jose E, Beswick, Ellen J, Grim, Carl, Uribe, Gabriela, Tafoya, Marissa, Chacon Palma, Gabriela, Samedi, Von, McKee, Rohini, Villeger, Romain, Fofanov, Yuriy, Cong, Yingzi, Yochum, Gregory, Koltun, Walter, Powell, Don, Pinchuk, Irina V

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Impairment of Tissue-Resident Mesenchymal Stem Cells in Chronic Ulcerative Colitis and Crohn’s Disease von Grim, Carl, Noble, Robert, Uribe, Gabriela, Khanipov, Kamil, Johnson, Paul, Koltun, Walter A, Watts, Tammara, Fofanov, Yuriy, Yochum, Gregory S, Powell, Don W, Beswick, Ellen J, Pinchuk, Irina V

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S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences von Kalesinskas, Laurynas, Cudone, Evan, Fofanov, Yuriy, Putonti, Catherine

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Ehrlichia chaffeensis TRP120 Binds a G+C-Rich Motif in Host Cell DNA and Exhibits Eukaryotic Transcriptional Activator Function von BING ZHU, KURIAKOSE, Jeeba A, TIAN LUO, BALLESTEROS, Efren, GUPTA, Sharu, FOFANOV, Yuriy, MCBRIDE, Jere W

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Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics von Beres, Stephen B, Carroll, Ronan K, Shea, Patrick R, Sitkiewicz, Izabela, Martinez-Gutierrez, Juan Carlos, Low, Donald E, McGeer, Allison, Willey, Barbara M, Green, Karen, Tyrrell, Gregory J, Goldman, Thomas D, Feldgarden, Michael, Birren, Bruce W, Fofanov, Yuriy, Boos, John, Wheaton, William D, Honisch, Christiane, Musser, James M

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Enhancer Associated Long Non-coding RNA Transcription and Gene Regulation in Experimental Models of Rickettsial Infection von Chowdhury, Imran H, Narra, Hema P, Sahni, Abha, Khanipov, Kamil, Fofanov, Yuriy, Sahni, Sanjeev K

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Whole genome sequencing of mutation accumulation lines reveals a low mutation rate in the social amoeba Dictyostelium discoideum von Saxer, Gerda, Havlak, Paul, Fox, Sara A, Quance, Michael A, Gupta, Sharu, Fofanov, Yuriy, Strassmann, Joan E, Queller, David C

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Identification of multidimensional Boolean patterns in microbial communities von Golovko, George, Kamil, Khanipov, Albayrak, Levent, Nia, Anna M., Arroyo Duarte, Renato Salomon, Chumakov, Sergei, Fofanov, Yuriy

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Expression Profiling of Long Noncoding RNA Splice Variants in Human Microvascular Endothelial Cells: Lipopolysaccharide Effects In Vitro von Sahni, Sanjeev K., Patel, Jignesh, Schroeder, Casey L. C., Khanipov, Kamil, Sahni, Abha, Narra, Hema P., Chowdhury, Imran H., Fofanov, Yuriy

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Measuring Alphavirus Fidelity Using Non-Infectious Virus Particles von Patterson, Edward, Khanipov, Kamil, Swetnam, Daniele M., Walsdorf, Samantha, Kautz, Tiffany F., Thangamani, Saravanan, Fofanov, Yuriy, Forrester, Naomi L.

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4471 Interactions of the Infant Nasopharyngeal Microbiota and Subjects’ Clinical Traits in Development of Viral Upper Respiratory Tract Infections and Acute Otitis Media von Khanipov, Kamil, Golovko, George, Nia, Anna, Evangelista, Lorraine, Fofanov, Yuriy

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Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa von Jeffries, Claire L., Lawrence, Gena G., Golovko, George, Kristan, Mojca, Orsborne, James, Spence, Kirstin, Hurn, Eliot, Bandibabone, Janvier, Tantely, Luciano M., Raharimalala, Fara N., Keita, Kalil, Camara, Denka, Barry, Yaya, Wat’senga, Francis, Manzambi, Emile Z., Afrane, Yaw A., Mohammed, Abdul R., Abeku, Tarekegn A., Hedge, Shivanand, Khanipov, Kamil, Pimenova, Maria, Fofanov, Yuriy, Boyer, Sebastien, Irish, Seth R., Hughes, Grant L., Walker, Thomas

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Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment von Tucker, Don L, Ott, C Mark, Huff, Stephen, Fofanov, Yuriy, Pierson, Duane L, Willson, Richard C, Fox, George E

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Draft Genome Sequence of Zobellella denitrificans ZD1 (JCM 13380), a Salt-Tolerant Denitrifying Bacterium Capable of Producing Poly(3-Hydroxybutyrate) von Wu, Yu-Wei, Shao, Yiru, Khanipov, Kamil, Golovko, Georgiy, Pimenova, Maria, Fofanov, Yuriy, Chu, Kung-Hui

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Survey of viral populations within Lake Michigan nearshore waters at four Chicago area beaches von Sible, Emily, Cooper, Alexandria, Malki, Kema, Bruder, Katherine, Watkins, Siobhan C., Fofanov, Yuriy, Putonti, Catherine

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Slim-filter: an interactive Windows-based application for illumina genome analyzer data assessment and manipulation von Golovko, Georgiy, Khanipov, Kamil, Rojas, Mark, Martinez-Alcántara, Antonio, Howard, Jesse J, Ballesteros, Efren, Gupta, Sharu, Widger, William, Fofanov, Yuriy

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Development and Characterization of a Highly Specific and Sensitive SYBR Green Reverse Transcriptase PCR Assay for Detection of the 2009 Pandemic H1N1 Influenza Virus on the Basis... von Medina, Rafael A, Rojas, Mark, Tuin, Astrid, Huff, Stephen, Ferres, Marcela, Martinez-Valdebenito, Constanza, Godoy, Paula, García-Sastre, Adolfo, Fofanov, Yuriy, SantaLucia, John Jr

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