Genotyping of Bartonella bacteria and their animal hosts: current status and perspectives von KOSOY, M., MCKEE, C., ALBAYRAK, L., FOFANOV, Y.

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A leafhopper-transmissible DNA virus with novel evolutionary lineage in the family geminiviridae implicated in grapevine redleaf disease by next-generation sequencing von Poojari, Sudarsana, Alabi, Olufemi J, Fofanov, Viacheslav Y, Naidu, Rayapati A

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Sample pooling methods for efficient pathogen screening: Practical implications von Furstenau, Tara N, Cocking, Jill H, Hepp, Crystal M, Fofanov, Viacheslav Y

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A fecal sequel: Testing the limits of a genetic assay for bat species identification von Walker, Faith M, Tobin, Abby, Simmons, Nancy B, Sobek, Colin J, Sanchez, Daniel E, Chambers, Carol L, Fofanov, Viacheslav Y

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Subradiance in dilute atomic ensembles: Role of pairs and multiple scattering von Fofanov, Y. A., Sokolov, I. M., Kaiser, R., Guerin, W.

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Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest von Hepp, Crystal M, Cocking, Jill Hager, Valentine, Michael, Young, Steven J, Damian, Dan, Samuels-Crow, Kimberly E, Sheridan, Krystal, Fofanov, Viacheslav Y, Furstenau, Tara N, Busch, Joseph D, Erickson, Daryn E, Lancione, Ryan C, Smith, Kirk, Will, James, Townsend, John, Keim, Paul S, Engelthaler, David M

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Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites von Furstenau, Tara N, Cocking, Jill H, Sahl, Jason W, Fofanov, Viacheslav Y

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Megafauna decline have reduced pathogen dispersal which may have increased emergent infectious diseases von Doughty, Christopher E., Prys‐Jones, Tomos O., Faurby, Søren, Abraham, Andrew J., Hepp, Crystal, Leshyk, Victor, Fofanov, Viacheslav Y., Nieto, Nathan C., Svenning, Jens‐Christian, Galetti, Mauro

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PIQA: pipeline for Illumina G1 genome analyzer data quality assessment von Martínez-Alcántara, A., Ballesteros, E., Feng, C., Rojas, M., Koshinsky, H., Fofanov, V. Y., Havlak, P., Fofanov, Y.

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Detection of Bacillus anthracis DNA in complex soil and air samples using next-generation sequencing von Be, Nicholas A, Thissen, James B, Gardner, Shea N, McLoughlin, Kevin S, Fofanov, Viacheslav Y, Koshinsky, Heather, Ellingson, Sally R, Brettin, Thomas S, Jackson, Paul J, Jaing, Crystal J

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Identification of Genome-Wide Mutations in Ciprofloxacin-Resistant F. tularensis LVS Using Whole Genome Tiling Arrays and Next Generation Sequencing von Jaing, Crystal J, McLoughlin, Kevin S, Thissen, James B, Zemla, Adam, Gardner, Shea N, Vergez, Lisa M, Bourguet, Feliza, Mabery, Shalini, Fofanov, Viacheslav Y, Koshinsky, Heather, Jackson, Paul J

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ColiSeq: a multiplex amplicon assay that provides strain level resolution of Escherichia coli directly from clinical specimens von Williamson, Charles H D, Vazquez, Adam J, Nunnally, Amalee E, Kyger, Kristen, Fofanov, Viacheslav Y, Furstenau, Tara N, Hornstra, Heidie M, Terriquez, Joel, Keim, Paul, Sahl, Jason W

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Correction: A Leafhopper-Transmissible DNA Virus with Novel Evolutionary Lineage in the Family Geminiviridae Implicated in Grapevine Redleaf Disease by Next-Generation Sequencing von Poojari, Sudarsana, Alabi, Olufemi J, Fofanov, Viacheslav Y, Naidu, Rayapati A

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Beijing Sublineages of Mycobacterium tuberculosis Differ in Pathogenicity in the Guinea Pig von Kato-Maeda, Midori, Shanley, Crystal A., Ackart, David, Jarlsberg, Leah G., Shang, Shaobin, Obregon-Henao, Andres, Harton, Marisabel, Basaraba, Randall J., Henao-Tamayo, Marcela, Barrozo, Joyce C., Rose, Jordan, Kawamura, L. Masae, Coscolla, Mireia, Fofanov, Viacheslav Y., Koshinsky, Heather, Gagneux, Sebastien, Hopewell, Philip C., Ordway, Diane J., Orme, Ian M.

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Prediction of enzyme function based on 3D templates of evolutionarily important amino acids von Kristensen, David M, Ward, R Matthew, Lisewski, Andreas Martin, Erdin, Serkan, Chen, Brian Y, Fofanov, Viacheslav Y, Kimmel, Marek, Kavraki, Lydia E, Lichtarge, Olivier

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Small RNA populations for two unrelated viruses exhibit different biases in strand polarity and proximity to terminal sequences in the insect host Homalodisca vitripennis von Sekhar Nandety, Raja, Fofanov, Viacheslav Y, Koshinsky, Heather, Stenger, Drake C, Falk, Bryce W

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Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role von Bowers, Jolene R, Valentine, Michael, Harrison, Veronica, Fofanov, Viacheslav Y, Gillece, John, Delisle, Josie, Patton, Bethany, Schupp, James, Sheridan, Krystal, Lemmer, Darrin, Ostdiek, Scott, Bains, Harlori K, Heim, Jennifer, Sylvester, Tammy, Prasai, Siru, Kretschmer, Melissa, Fowle, Nicole, Komatsu, Kenneth, Brady, Shane, Robinson, Susan, Fitzpatrick, Kathryn, Ostovar, Gholamabbas Amin, Alsop, Eric, Hutchins, Elizabeth, Jensen, Kendall, Keim, Paul, Engelthaler, David M

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Metagenomic Analysis of the Airborne Environment in Urban Spaces von Be, Nicholas A, Thissen, James B, Fofanov, Viacheslav Y, Allen, Jonathan E, Rojas, Mark, Golovko, George, Fofanov, Yuriy, Koshinsky, Heather, Jaing, Crystal J

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Sequential gene regulatory events leading to glucocorticoid-evoked apoptosis of CEM human leukemic cells:interactions of MAPK, MYC and glucocorticoid pathways von Webb, M.S., Miller, A.L., Howard, T.L., Johnson, B.H., Chumakov, S., Fofanov, Y., Nguyen-Vu, T., Lin, C.Y., Thompson, E.B.

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Selective whole genome amplification and sequencing of Coxiella burnetii directly from environmental samples von Cocking, Jill Hager, Deberg, Michael, Schupp, Jim, Sahl, Jason, Wiggins, Kristin, Porty, Ariel, Hornstra, Heidie M., Hepp, Crystal, Jardine, Claire, Furstenau, Tara N., Schulte-Hostedde, Albrecht, Fofanov, Viacheslav Y., Pearson, Talima

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