Gene expression-based classification of non-small cell lung carcinomas and survival prediction von Hou, Jun, Aerts, Joachim, den Hamer, Bianca, van Ijcken, Wilfred, den Bakker, Michael, Riegman, Peter, van der Leest, Cor, van der Spek, Peter, Foekens, John A, Hoogsteden, Henk C, Grosveld, Frank, Philipsen, Sjaak

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Selection of Bone Metastasis Seeds by Mesenchymal Signals in the Primary Tumor Stroma von Zhang, Xiang H.-F., Jin, Xin, Malladi, Srinivas, Zou, Yilong, Wen, Yong H., Brogi, Edi, Smid, Marcel, Foekens, John A., Massagué, Joan

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MicroRNAs as possible indicators of drug sensitivity in breast cancer cell lines von Uhr, Katharina, Prager-van der Smissen, Wendy J C, Heine, Anouk A J, Ozturk, Bahar, van Jaarsveld, Marijn T M, Boersma, Antonius W M, Jager, Agnes, Wiemer, Erik A C, Smid, Marcel, Foekens, John A, Martens, John W M

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Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation von Brinkman, Arie B., Nik-Zainal, Serena, Simmer, Femke, Rodríguez-González, F. Germán, Smid, Marcel, Alexandrov, Ludmil B., Butler, Adam, Martin, Sancha, Davies, Helen, Glodzik, Dominik, Zou, Xueqing, Ramakrishna, Manasa, Staaf, Johan, Ringnér, Markus, Sieuwerts, Anieta, Ferrari, Anthony, Morganella, Sandro, Fleischer, Thomas, Kristensen, Vessela, Gut, Marta, van de Vijver, Marc J., Børresen-Dale, Anne-Lise, Richardson, Andrea L., Thomas, Gilles, Gut, Ivo G., Martens, John W. M., Foekens, John A., Stratton, Michael R., Stunnenberg, Hendrik G.

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A Systematic Analysis of Oncogenic Gene Fusions in Primary Colon Cancer von Kloosterman, Wigard P, Coebergh van den Braak, Robert R J, Pieterse, Mark, van Roosmalen, Markus J, Sieuwerts, Anieta M, Stangl, Christina, Brunekreef, Ronne, Lalmahomed, Zarina S, Ooft, Salo, van Galen, Anne, Smid, Marcel, Lefebvre, Armel, Zwartkruis, Fried, Martens, John W M, Foekens, John A, Biermann, Katharina, Koudijs, Marco J, Ijzermans, Jan N M, Voest, Emile E

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Efficacy of Cabazitaxel in Castration-resistant Prostate Cancer Is Independent of the Presence of AR-V7 in Circulating Tumor Cells von Onstenk, Wendy, Sieuwerts, Anieta M, Kraan, Jaco, Van, Mai, Nieuweboer, Annemieke J.M, Mathijssen, Ron H.J, Hamberg, Paul, Meulenbeld, Hielke J, De Laere, Bram, Dirix, Luc Y, van Soest, Robert J, Lolkema, Martijn P, Martens, John W.M, van Weerden, Wytske M, Jenster, Guido W, Foekens, John A, de Wit, Ronald, Sleijfer, Stefan

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Integrative analysis of genomic amplification-dependent expression and loss-of-function screen identifies ASAP1 as a driver gene in triple-negative breast cancer progression von He, Jichao, McLaughlin, Ronan P., van der Beek, Lambert, Canisius, Sander, Wessels, Lodewyk, Smid, Marcel, Martens, John W. M., Foekens, John A., Zhang, Yinghui, van de Water, Bob

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miRNA expression profiling of 51 human breast cancer cell lines reveals subtype and driver mutation-specific miRNAs von Riaz, Muhammad, van Jaarsveld, Marijn T M, Hollestelle, Antoinette, Prager-van der Smissen, Wendy J C, Heine, Anouk A J, Boersma, Antonius W M, Liu, Jingjing, Helmijr, Jean, Ozturk, Bahar, Smid, Marcel, Wiemer, Erik A, Foekens, John A, Martens, John W M

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Circulating tumor cells (CTCs): Detection methods and their clinical relevance in breast cancer von Mostert, Bianca, Sleijfer, Stefan, Foekens, John A, Gratama, Jan Willem

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Subtypes of breast cancer show preferential site of relapse von Smid, Marcel, Wang, Yixin, Zhang, Yi, Sieuwerts, Anieta M, Yu, Jack, Klijn, Jan G M, Foekens, John A, Martens, John W M

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Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons von Smid, Marcel, Coebergh van den Braak, Robert R J, van de Werken, Harmen J G, van Riet, Job, van Galen, Anne, de Weerd, Vanja, van der Vlugt-Daane, Michelle, Bril, Sandra I, Lalmahomed, Zarina S, Kloosterman, Wigard P, Wilting, Saskia M, Foekens, John A, IJzermans, Jan N M, Martens, John W M, Sieuwerts, Anieta M

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Validation of a Radiosensitivity Molecular Signature in Breast Cancer von ESCHRICH, Steven A, FULP, William J, BERGH, Jonas, TORRES-ROCA, Javier F, PAWITAN, Yudi, FOEKENS, John A, SMID, Marcel, MARTENS, John W. M, ECHEVARRIA, Michelle, KAMATH, Vidya, LEE, Ji-Hyun, HARRIS, Eleanor E

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A kinase inhibitor screen identifies a dual cdc7/CDK9 inhibitor to sensitise triple-negative breast cancer to EGFR-targeted therapy von McLaughlin, Ronan P, He, Jichao, van der Noord, Vera E, Redel, Jevin, Foekens, John A, Martens, John W M, Smid, Marcel, Zhang, Yinghui, van de Water, Bob

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Latent Bone Metastasis in Breast Cancer Tied to Src-Dependent Survival Signals von Zhang, Xiang H.-F., Wang, Qiongqing, Gerald, William, Hudis, Clifford A., Norton, Larry, Smid, Marcel, Foekens, John A., Massagué, Joan

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Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping von de Vree, Paula J P, de Wit, Elzo, Yilmaz, Mehmet, van de Heijning, Monique, Klous, Petra, Verstegen, Marjon J A M, Wan, Yi, Teunissen, Hans, Krijger, Peter H L, Geeven, Geert, Eijk, Paul P, Sie, Daoud, Ylstra, Bauke, Hulsman, Lorette O M, van Dooren, Marieke F, van Zutven, Laura J C M, van den Ouweland, Ans, Verbeek, Sjef, van Dijk, Ko Willems, Cornelissen, Marion, Das, Atze T, Berkhout, Ben, Sikkema-Raddatz, Birgit, van den Berg, Eva, van der Vlies, Pieter, Weening, Desiree, den Dunnen, Johan T, Matusiak, Magdalena, Lamkanfi, Mohamed, Ligtenberg, Marjolijn J L, ter Brugge, Petra, Jonkers, Jos, Foekens, John A, Martens, John W, van der Luijt, Rob, van Amstel, Hans Kristian Ploos, van Min, Max, Splinter, Erik, de Laat, Wouter

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Multi-targeted kinase inhibition alleviates mTOR inhibitor resistance in triple-negative breast cancer von He, Jichao, McLaughlin, Ronan P., van der Noord, Vera, Foekens, John A., Martens, John W. M., van Westen, Gerard, Zhang, Yinghui, van de Water, Bob

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Anti-Epithelial Cell Adhesion Molecule Antibodies and the Detection of Circulating Normal-Like Breast Tumor Cells von Sieuwerts, Anieta M., Kraan, Jaco, Bolt, Joan, van der Spoel, Petra, Elstrodt, Fons, Schutte, Mieke, Martens, John W. M., Gratama, Jan-Willem, Sleijfer, Stefan, Foekens, John A.

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Uncovering the signaling landscape controlling breast cancer cell migration identifies novel metastasis driver genes von Koedoot, Esmee, Fokkelman, Michiel, Rogkoti, Vasiliki-Maria, Smid, Marcel, van de Sandt, Iris, de Bont, Hans, Pont, Chantal, Klip, Janna E., Wink, Steven, Timmermans, Mieke A., Wiemer, Erik A. C., Stoilov, Peter, Foekens, John A., Le Dévédec, Sylvia E., Martens, John W. M., van de Water, Bob

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Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen von Loi, Sherene, Haibe-Kains, Benjamin, Desmedt, Christine, Wirapati, Pratyaksha, Lallemand, Françoise, Tutt, Andrew M, Gillet, Cheryl, Ellis, Paul, Ryder, Kenneth, Reid, James F, Daidone, Maria G, Pierotti, Marco A, Berns, Els Mjj, Jansen, Maurice Phm, Foekens, John A, Delorenzi, Mauro, Bontempi, Gianluca, Piccart, Martine J, Sotiriou, Christos

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Young Age at Diagnosis Correlates With Worse Prognosis and Defines a Subset of Breast Cancers With Shared Patterns of Gene Expression von ANDERS, Carey K, HSU, David S, NEVINS, Joseph R, POTTI, Anil, BLACKWELL, Kimberly L, BROADWATER, Gloria, ACHARYA, Chaitanya R, FOEKENS, John A, YI ZHANG, YIXIN WANG, MARCOM, P. Kelly, MARKS, Jeffrey R, FEBBO, Phillip G

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