T cell-based strategies for HIV-1 vaccines von Korber, Bette, Fischer, Will

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Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus von Korber, Bette, Fischer, Will M., Gnanakaran, Sandrasegaram, Yoon, Hyejin, Theiler, James, Abfalterer, Werner, Hengartner, Nick, Giorgi, Elena E., Bhattacharya, Tanmoy, Foley, Brian, Hastie, Kathryn M., Parker, Matthew D., Partridge, David G., Evans, Cariad M., Freeman, Timothy M., de Silva, Thushan I., Angyal, Adrienne, Brown, Rebecca L., Carrilero, Laura, Green, Luke R., Groves, Danielle C., Johnson, Katie J., Keeley, Alexander J., Lindsey, Benjamin B., Parsons, Paul J., Raza, Mohammad, Rowland-Jones, Sarah, Smith, Nikki, Tucker, Rachel M., Wang, Dennis, Wyles, Matthew D., McDanal, Charlene, Perez, Lautaro G., Tang, Haili, Moon-Walker, Alex, Whelan, Sean P., LaBranche, Celia C., Saphire, Erica O., Montefiori, David C.

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Defining the risk of SARS-CoV-2 variants on immune protection von Ghedin, Elodie, Krammer, Florian, Grifoni, Alba, Alter, Galit, Baric, Ralph S., Barouch, Dan H., Bloyet, Louis-Marie, Bonenfant, Gaston, Boon, Adrianus C. M., Boritz, Eli A., Bratt, Debbie L., Bricker, Traci L., Brown, Liliana, Buchser, William J., Carreño, Juan Manuel, Darling, Tamarand L., Di, Han, Dittmann, Meike, Doria-Rose, Nicole A., Douek, Daniel C., Drosten, Christian, Edara, Venkata-Viswanadh, Ellebedy, Ali, Fabrizio, Thomas P., Ferrari, Guido, Fischer, Will M., Florence, William C., Franks, John, García-Sastre, Adolfo, Godzik, Adam, Gonzalez-Reiche, Ana Silvia, Gordon, Aubree, Haagmans, Bart L., Halfmann, Peter J., Holbrook, Michael R., James, Sarah L., Jaroszewski, Lukasz, Johnson, Robert M., Jones, Terry C., Kawaoka, Yoshihiro, Kercher, Lisa, Koopmans, Marion P. G., Korber, Bette, Koren, Eilay, LeGresley, Eric B., Liu, Zhuoming, Livingston, Brandi, Logue, James P., Luo, Yang, McDermott, Adrian B., McElrath, Margaret J., Menachery, Vineet D., Mühlemann, Barbara, Munt, Jenny E., Nair, Manoj S., Netzl, Antonia, O’Dell, Sijy, Pekosz, Andrew, Perlman, Stanley, Pontelli, Marjorie C., Rothlauf, Paul W., Sacharen, Sinai, Scheuermann, Richard H., Schmidt, Stephen D., Schotsaert, Michael, Schultz-Cherry, Stacey, Seder, Robert A., Sedova, Mayya, Shabman, Reed S., Shen, Xiaoying, Shi, Pei-Yong, Shukla, Maulik, Simon, Viviana, Stumpf, Spencer, Thackray, Larissa B., Theiler, James, Thomas, Paul G., Trifkovic, Sanja, Turner, Samuel A., Vakaki, Maria A., van Bakel, Harm, VanBlargan, Laura A., Vincent, Leah R., Wallace, Zachary S., Wang, Li, Wang, Maple, Wang, Pengfei, Wang, Wei, Webby, Richard J., Wentworth, David E., Whelan, Sean P. J., Whitener, Bradley M., Wilks, Samuel H., Xie, Xuping, Ying, Baoling, Zhou, Bin, Hertz, Tomer, Smith, Derek J., Diamond, Michael S., Suthar, Mehul S.

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Characterization of SARS-CoV-2 Omicron BA.2.75 clinical isolates von Uraki, Ryuta, Iida, Shun, Halfmann, Peter J., Yamayoshi, Seiya, Hirata, Yuichiro, Iwatsuki-Horimoto, Kiyoko, Kiso, Maki, Ito, Mutsumi, Furusawa, Yuri, Ueki, Hiroshi, Sakai-Tagawa, Yuko, Kuroda, Makoto, Maemura, Tadashi, Kim, Taksoo, Mine, Sohtaro, Iwamoto, Noriko, Li, Rong, Liu, Yanan, Larson, Deanna, Fukushi, Shuetsu, Watanabe, Shinji, Maeda, Ken, Wang, Zhongde, Ohmagari, Norio, Theiler, James, Fischer, Will, Korber, Bette, Imai, Masaki, Suzuki, Tadaki, Kawaoka, Yoshihiro

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HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens von Fischer, Will, Giorgi, Elena E., Chakraborty, Srirupa, Nguyen, Kien, Bhattacharya, Tanmoy, Theiler, James, Goloboff, Pablo A., Yoon, Hyejin, Abfalterer, Werner, Foley, Brian T., Tegally, Houriiyah, San, James Emmanuel, de Oliveira, Tulio, Wilkinson, Eduan, Msomi, Nokukhanya, Iranzadeh, Arash, Fonseca, Vagner, Doolabh, Deelan, Mlisana, Koleka, von Gottberg, Anne, Walaza, Sibongile, Allam, Mushal, Ismail, Arshad, Mohale, Thabo, Glass, Allison J., Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Petruccione, Francesco, Sigal, Alex, Hardie, Diana, Marais, Gert, Hsiao, Marvin, Korsman, Stephen, Davies, Mary-Ann, Tyers, Lynn, Mudau, Innocent, York, Denis, Maslo, Caroline, Goedhals, Dominique, Abrahams, Shareef, Laguda-Akingba, Oluwakemi, Alisoltani-Dehkordi, Arghavan, Godzik, Adam, Wibmer, Constantinos Kurt, Sewell, Bryan Trevor, Lourenço, José, Pond, Sergei L. Kosakovsky, Weaver, Steven, Giovanetti, Marta, Alcantara, Luiz Carlos Junior, Martin, Darren, Bhiman, Jinal N., Williamson, Carolyn, Gnanakaran, Sandrasegaram, Korber, Bette

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US National Institutes of Health Prioritization of SARS-CoV-2 Variants von Turner, Sam, Alisoltani, Arghavan, Bratt, Debbie, Cohen-Lavi, Liel, Dearlove, Bethany L, Drosten, Christian, Fischer, Will M, Fouchier, Ron A M, Gonzalez-Reiche, Ana Silvia, Jaroszewski, Lukasz, Khalil, Zain, LeGresley, Eric, Johnson, Marc, Jones, Terry C, Mühlemann, Barbara, O'Connor, David, Sedova, Mayya, Shukla, Maulik, Theiler, James, Wallace, Zachary S, Yoon, Hyejin, Zhang, Yun, van Bakel, Harm, Degrace, Marciela M, Ghedin, Elodie, Godzik, Adam, Hertz, Tomer, Korber, Bette, Lemieux, Jacob, Niewiadomska, Anna M, Post, Diane J, Rolland, Morgane, Scheuermann, Richard, Smith, Derek J

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Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys von Barouch, Dan H, O'Brien, Kara L, Simmons, Nathaniel L, King, Sharon L, Abbink, Peter, Maxfield, Lori F, Sun, Ying-Hua, La Porte, Annalena, Riggs, Ambryice M, Lynch, Diana M, Clark, Sarah L, Backus, Katherine, Perry, James R, Seaman, Michael S, Carville, Angela, Mansfield, Keith G, Szinger, James J, Fischer, Will, Muldoon, Mark, Korber, Bette

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Preexisting memory CD4(+) T cells contribute to the primary response in an HIV-1 vaccine trial von Campion, Suzanne L., Brenna, Elena, Thomson, Elaine, Fischer, Will, Ladell, Kristin, McLaren, James E., Price, David A., Frahm, Nicole, McElrath, Juliana M., Cohen, Kristen W., Maenza, Janine R., Walsh, Stephen R., Baden, Lindsey R., Haynes, Barton F., Korber, Bette, Borrow, Persephone, McMichael, Andrew J.

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Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing von Fischer, Will, Ganusov, Vitaly V, Giorgi, Elena E, Hraber, Peter T, Keele, Brandon F, Leitner, Thomas, Han, Cliff S, Gleasner, Cheryl D, Green, Lance, Lo, Chien-Chi, Nag, Ambarish, Wallstrom, Timothy C, Wang, Shuyi, McMichael, Andrew J, Haynes, Barton F, Hahn, Beatrice H, Perelson, Alan S, Borrow, Persephone, Shaw, George M, Bhattacharya, Tanmoy, Korber, Bette T

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Sparse coding of pathology slides compared to transfer learning with deep neural networks von Fischer, Will, Moudgalya, Sanketh S, Cohn, Judith D, Nguyen, Nga T T, Kenyon, Garrett T

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Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection von Kim, Eun-Young, Lorenzo-Redondo, Ramon, Little, Susan J, Chung, Yoon-Seok, Phalora, Prabhjeet K, Maljkovic Berry, Irina, Archer, John, Penugonda, Sudhir, Fischer, Will, Richman, Douglas D, Bhattacharya, Tanmoy, Malim, Michael H, Wolinsky, Steven M

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Can Rental Markets Absorb a Major Voucher Expansion? von Fischer, Will

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A multiple-alignment based primer design algorithm for genetically highly variable DNA targets von Brodin, Johanna, Krishnamoorthy, Mohan, Athreya, Gayathri, Fischer, Will, Hraber, Peter, Gleasner, Cheryl, Green, Lance, Korber, Bette, Leitner, Thomas

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Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection von Kijak, Gustavo H, Sanders-Buell, Eric, Chenine, Agnes-Laurence, Eller, Michael A, Goonetilleke, Nilu, Thomas, Rasmi, Leviyang, Sivan, Harbolick, Elizabeth A, Bose, Meera, Pham, Phuc, Oropeza, Celina, Poltavee, Kultida, O'Sullivan, Anne Marie, Billings, Erik, Merbah, Melanie, Costanzo, Margaret C, Warren, Joanna A, Slike, Bonnie, Li, Hui, Peachman, Kristina K, Fischer, Will, Gao, Feng, Cicala, Claudia, Arthos, James, Eller, Leigh A, O'Connell, Robert J, Sinei, Samuel, Maganga, Lucas, Kibuuka, Hannah, Nitayaphan, Sorachai, Rao, Mangala, Marovich, Mary A, Krebs, Shelly J, Rolland, Morgane, Korber, Bette T, Shaw, George M, Michael, Nelson L, Robb, Merlin L, Tovanabutra, Sodsai, Kim, Jerome H

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Vaccine Advances against Venezuelan, Eastern, and Western Equine Encephalitis Viruses von Stromberg, Zachary R., Fischer, Will, Bradfute, Steven B., Kubicek-Sutherland, Jessica Z., Hraber, Peter

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Distinct Evolutionary Pressures Underlie Diversity in Simian Immunodeficiency Virus and Human Immunodeficiency Virus Lineages von FISCHER, Will, APETREI, Cristian, KORBER, Bette T, SANTIAGO, Mario L, YINGYING LI, GAUTAM, Rajeev, PANDREA, Ivona, SHAW, George M, HAHN, Beatrice H, LETVIN, Norman L, NABEL, Gary J

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Effective Cytotoxic T Lymphocyte Targeting of Persistent HIV-1 during Antiretroviral Therapy Requires Priming of Naive CD8+ T Cells von Smith, Kellie N, Mailliard, Robbie B, Piazza, Paolo A, Fischer, Will, Korber, Bette T, Fecek, Ronald J, Ratner, Deena, Gupta, Phalguni, Mullins, James I, Rinaldo, Charles R

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Structural Transition and Antibody Binding of EBOV GP and ZIKV E Proteins from Pre-Fusion to Fusion-Initiation State von Lappala, Anna, Nishima, Wataru, Miner, Jacob, Fenimore, Paul, Fischer, Will, Hraber, Peter, Zhang, Ming, McMahon, Benjamin, Tung, Chang-Shung

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Expanded Breadth of the T-Cell Response to Mosaic Human Immunodeficiency Virus Type 1 Envelope DNA Vaccination von KONG, Wing-Pui, LAN WU, NABEL, Gary J, WALLSTROM, Timothy C, FISCHER, Will, YANG, Zhi-Yong, KO, Sung-Youl, LETVIN, Norman L, HAYNES, Barton F, HAHN, Beatrice H, KORBER, Bette

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Correction: Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection von Kijak, Gustavo H, Sanders-Buell, Eric, Chenine, Agnes-Laurence, Eller, Michael A, Goonetilleke, Nilu, Thomas, Rasmi, Leviyang, Sivan, Harbolick, Elizabeth A, Bose, Meera, Pham, Phuc, Oropeza, Celina, Poltavee, Kultida, O'Sullivan, Anne Marie, Billings, Erik, Merbah, Melanie, Costanzo, Margaret C, Warren, Joanna A, Slike, Bonnie, Li, Hui, Peachman, Kristina K, Fischer, Will, Gao, Feng, Cicala, Claudia, Arthos, James, Eller, Leigh A, O'Connell, Robert J, Sinei, Samuel, Maganga, Lucas, Kibuuka, Hannah, Nitayaphan, Sorachai, Rao, Mangala, Marovich, Mary A, Krebs, Shelly J, Rolland, Morgane, Korber, Bette T, Shaw, George M, Michael, Nelson L, Robb, Merlin L, Tovanabutra, Sodsai, Kim, Jerome H

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