Improved data analysis for the MinION nanopore sequencer von Jain, Miten, Fiddes, Ian T, Miga, Karen H, Olsen, Hugh E, Paten, Benedict, Akeson, Mark

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Progressive Cactus is a multiple-genome aligner for the thousand-genome era von Armstrong, Joel, Hickey, Glenn, Diekhans, Mark, Fiddes, Ian T., Novak, Adam M., Deran, Alden, Fang, Qi, Xie, Duo, Feng, Shaohong, Stiller, Josefin, Genereux, Diane, Johnson, Jeremy, Marinescu, Voichita Dana, Alföldi, Jessica, Harris, Robert S., Lindblad-Toh, Kerstin, Haussler, David, Karlsson, Elinor, Jarvis, Erich D., Zhang, Guojie, Paten, Benedict

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A massive rock and ice avalanche caused the 2021 disaster at Chamoli, Indian Himalaya von Shugar, D. H., Jacquemart, M., Shean, D., Bhushan, S., Upadhyay, K., Sattar, A., Schwanghart, W., McBride, S., de Vries, M. Van Wyk, Mergili, M., Emmer, A., Deschamps-Berger, C., McDonnell, M., Bhambri, R., Allen, S., Berthier, E., Carrivick, J. L., Clague, J. J., Dokukin, M., Dunning, S. A., Frey, H., Gascoin, S., Haritashya, U. K., Huggel, C., Kääb, A., Kargel, J. S., Kavanaugh, J. L., Lacroix, P., Petley, D., Rupper, S., Azam, M. F., Cook, S. J., Dimri, A. P., Eriksson, M., Farinotti, D., Fiddes, J., Gnyawali, K. R., Harrison, S., Jha, M., Koppes, M., Kumar, A., Leinss, S., Majeed, U., Mal, S., Muhuri, A., Noetzli, J., Paul, F., Rashid, I., Sain, K., Steiner, J., Ugalde, F., Watson, C. S., Westoby, M. J.

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The UCSC Genome Browser database: 2018 update von Casper, Jonathan, Zweig, Ann S, Villarreal, Chris, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Karolchik, Donna, Hinrichs, Angie S, Haeussler, Maximilian, Guruvadoo, Luvina, Navarro Gonzalez, Jairo, Gibson, David, Fiddes, Ian T, Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Barber, Galt P, Armstrong, Joel, Haussler, David, Kuhn, Robert M, Kent, W James

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Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing von Replogle, Joseph M., Norman, Thomas M., Xu, Albert, Hussmann, Jeffrey A., Chen, Jin, Cogan, J. Zachery, Meer, Elliott J., Terry, Jessica M., Riordan, Daniel P., Srinivas, Niranjan, Fiddes, Ian T., Arthur, Joseph G., Alvarado, Luigi J., Pfeiffer, Katherine A., Mikkelsen, Tarjei S., Weissman, Jonathan S., Adamson, Britt

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Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution von Pollen, Alex A., Bhaduri, Aparna, Andrews, Madeline G., Nowakowski, Tomasz J., Meyerson, Olivia S., Mostajo-Radji, Mohammed A., Di Lullo, Elizabeth, Alvarado, Beatriz, Bedolli, Melanie, Dougherty, Max L., Fiddes, Ian T., Kronenberg, Zev N., Shuga, Joe, Leyrat, Anne A., West, Jay A., Bershteyn, Marina, Lowe, Craig B., Pavlovic, Bryan J., Salama, Sofie R., Haussler, David, Eichler, Evan E., Kriegstein, Arnold R.

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Jesus as the Pattern of Love in Atonement von Paul Fiddes

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A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing von Petti, Allegra A., Williams, Stephen R., Miller, Christopher A., Fiddes, Ian T., Srivatsan, Sridhar N., Chen, David Y., Fronick, Catrina C., Fulton, Robert S., Church, Deanna M., Ley, Timothy J.

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Cloud, precipitation and radiation responses to large perturbations in global dimethyl sulfide von Fiddes, Sonya L, Woodhouse, Matthew T, Nicholls, Zebedee, Lane, Todd P, Schofield, Robyn

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Coral-reef-derived dimethyl sulfide and the climatic impact of the loss of coral reefs von Fiddes, Sonya L, Woodhouse, Matthew T, Lane, Todd P, Schofield, Robyn

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TopoSCALE v.1.0: downscaling gridded climate data in complex terrain von Fiddes, J, Gruber, S

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Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation von Fiddes, Ian T, Armstrong, Joel, Diekhans, Mark, Nachtweide, Stefanie, Kronenberg, Zev N, Underwood, Jason G, Gordon, David, Earl, Dent, Keane, Thomas, Eichler, Evan E, Haussler, David, Stanke, Mario, Paten, Benedict

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Nanopore sequencing and assembly of a human genome with ultra-long reads von Jain, Miten, Koren, Sergey, Miga, Karen H, Quick, Josh, Rand, Arthur C, Sasani, Thomas A, Tyson, John R, Beggs, Andrew D, Dilthey, Alexander T, Fiddes, Ian T, Malla, Sunir, Marriott, Hannah, Nieto, Tom, O'Grady, Justin, Olsen, Hugh E, Pedersen, Brent S, Rhie, Arang, Richardson, Hollian, Quinlan, Aaron R, Snutch, Terrance P, Tee, Louise, Paten, Benedict, Phillippy, Adam M, Simpson, Jared T, Loman, Nicholas J, Loose, Matthew

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RFID tags for wireless electrochemical detection of volatile chemicals von Fiddes, Lindsey K., Yan, Ning

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Southern Ocean cloud and shortwave radiation biases in a nudged climate model simulation: does the model ever get it right? von Fiddes, Sonya L, Protat, Alain, Mallet, Marc D, Alexander, Simon P, Woodhouse, Matthew T

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Whole-Genome Alignment and Comparative Annotation von Armstrong, Joel, Fiddes, Ian T, Diekhans, Mark, Paten, Benedict

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Paired involvement of human-specific Olduvai domains and NOTCH2NL genes in human brain evolution von Fiddes, Ian T., Pollen, Alex A., Davis, Jonathan M., Sikela, James M.

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Hyper-resolution ensemble-based snow reanalysis in mountain regions using clustering von Fiddes, Joel, Aalstad, Kristoffer, Westermann, Sebastian

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Assessing the cloud radiative bias at Macquarie Island in the ACCESS-AM2 model von Pei, Zhangcheng, Fiddes, Sonya L, French, W. John R, Alexander, Simon P, Mallet, Marc D, Kuma, Peter, McDonald, Adrian

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Electrochemical detection of biogenic amines during food spoilage using an integrated sensing RFID tag von Fiddes, Lindsey K., Chang, James, Yan, Ning

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